Part of scaffold_682 (Scaffold)

For more information consult the page for scaffold_682 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PODXL ENSTTRG00000014208 (Bottlenosed dolphin)

Gene Details

podocalyxin-like

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013473, Bottlenosed dolphin)

Protein Percentage 88.61%
cDNA percentage 92.41%
Ka/Ks Ratio 0.77766 (Ka = 0.0758, Ks = 0.0975)

PODXL ENSBTAG00000010452 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013799, Cow)

Protein Percentage 61.52%
cDNA percentage 73.73%
Ka/Ks Ratio 0.81805 (Ka = 0.3222, Ks = 0.3938)

PODXL  (Minke Whale)

Gene Details

podocalyxin-like

External Links

Gene match (Identifier: BACU006783, Minke Whale)

Protein Percentage 97.49%
cDNA percentage 98.19%
Ka/Ks Ratio 0.45753 (Ka = 0.0137, Ks = 0.0299)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1602 bp    Location:109902..153222   Strand:+
>bmy_12005
ATGCGCTCCGCGCTGATGCTCTCGGCGTTTCTGCTGCTGCTGCCGCTGTCGCTCTCCCAGAATGAAGTCAAGCCTATTGGTGAAACAGCTGCCGAAGAAAGCAAGCCAGACACAGTTCCACCATCCAGTGCTCAAAACACAGTCAAACAAAGCACAGTCCCACCATCCACTGATAAAAGTGTGACTGCATTGGAGACCAAGGGAAGCACACCCACAACGCCTAGCACCTCAAGGGCAGTGCCACCCTCAGCCCAGCAAAGCACAACTGCAGCAGCCAGTGGCAAAGATGAGAAACCAGCCACAGGCAACTCTGCTATAACTACTAAAGACTCAAAGGATTCTACAACCACACCAACCACTGTCTCGACAAAGCCTGAAACCACAAGCAGCCAGAGTGGAATTAAAAGCAATTCAGCTAAATCTGGAACCCAGAGTAGCCACGGTGTGACCACAAGCAGTGTGATCACTAAGGAAGGAAATCAGGCAGCCTCTGACCTTCCAAATCTGGGTGACACCTCAGTCATCACGCCTGCCCTTCCTTCCTTGCCCACCCCAGCAAGCACTCACCAGCCTAGCACGGTCCCTGTGACTTCGGTCCCTGTGACTTCGGAGCCCGCAGGGAGCTCCTCCGAGGGACCAAACAAAATTACAGCAGCTACAAGTTTAGGCACAATGGCGGGTCCCACCTTCACGACGCAGGGGACGCTGACCACACTAACACCATGGGTTACCTCACAAGGAACTCAACACACCTCCAGCAAGACGCCAGCTGTCACTGGCACCTCTGGGGCTCTGCAGCCTACAGGCTCTTCATCGGGACCTGGGACCACATCTCCTGCCAGGGGACCCACAAGCTCCAACACTCATTTGGAGTCAACTGCCCCCCAAGGCTCCAGTATCCCTTCTCCCACCTCAGTAATTTCAGCAGGTGTGGGACAGATACAGTGCGATTCTCCCGAAAAGCTGAATGAGAAGATGCTCGTCCTGAACATCTCGAAAACTGATGTCTCGAAAACCAACATCTGTAATGCGACCGCTTCGAATGACAAACTGGTCACACTTTTGTGCCGAGCAGCAAAAGCCTCCTTCAACCCAGCTCAAGATCAGTGCCATATACAGCTGGCACCTGTTCCAGAAATCCAGGCCGTGGCAATCAAACAAATCACTATCTGCACAAACCTCTTTCCCACGGACGTTTATGAATTGCTGAAAGACAAATGGGATGACCTAAAAGAGGTGGGAGTCAATGACATGCAGTTTGAGGGTCAAGGACCACCAGAAGAGACCGAGGACCGGTTCAGCATGCCCCTCATCATCACTATTGTCTGCATGGCATCCTTCTTGCTCCTGGTCGCGGCCCTTTATGGCTGCTGCCACCAGCGCCTCTCCCAGAGGAAGGACCAGCAACGACTAACAGAGGAGCTACAGACGGTGGAGAATGGTTACCACGACAATCCAACCCTGGAAGTGATGGAGACCTCATCAGAGATGCAGGAGAAAAAGGTGGTCAACCTGAATGGGGAGCTGGGGGACAGCTGGATCGTCCCTCTGGACAACCTGACCAAGGATGACCTAGATGAGGAGGAAGACACACACCTCTAA

Related Sequences

bmy_12005T0 Protein

Length: 534 aa      View alignments
>bmy_12005T0
MRSALMLSAFLLLLPLSLSQNEVKPIGETAAEESKPDTVPPSSAQNTVKQSTVPPSTDKSVTALETKGSTPTTPSTSRAVPPSAQQSTTAAASGKDEKPATGNSAITTKDSKDSTTTPTTVSTKPETTSSQSGIKSNSAKSGTQSSHGVTTSSVITKEGNQAASDLPNLGDTSVITPALPSLPTPASTHQPSTVPVTSVPVTSEPAGSSSEGPNKITAATSLGTMAGPTFTTQGTLTTLTPWVTSQGTQHTSSKTPAVTGTSGALQPTGSSSGPGTTSPARGPTSSNTHLESTAPQGSSIPSPTSVISAGVGQIQCDSPEKLNEKMLVLNISKTDVSKTNICNATASNDKLVTLLCRAAKASFNPAQDQCHIQLAPVPEIQAVAIKQITICTNLFPTDVYELLKDKWDDLKEVGVNDMQFEGQGPPEETEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNPTLEVMETSSEMQEKKVVNLNGELGDSWIVPLDNLTKDDLDEEEDTHL*