Sequence detailsbmy_12005 (Coding sequence)

Part of scaffold_682 (SequenceType object (1))

For more information consult the page for scaffold_682 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PODXLENSTTRG00000014208 (Bottlenosed dolphin)

Gene Details

podocalyxin-like

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000013473, Bottlenosed dolphin)

Protein Percentage 88.61%
cDNA percentage 92.41%
Ka/Ks Ratio 0.77766 (Ka = 0.0758, Ks = 0.0975)

PODXLENSBTAG00000010452 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000013799, Cow)

Protein Percentage 61.52%
cDNA percentage 73.73%
Ka/Ks Ratio 0.81805 (Ka = 0.3222, Ks = 0.3938)

PODXL (Minke Whale)

Gene Details

podocalyxin-like

External Links

Gene match (Identifier: BACU006783, Minke Whale)

Protein Percentage 97.49%
cDNA percentage 98.19%
Ka/Ks Ratio 0.45753 (Ka = 0.0137, Ks = 0.0299)

Additional orthologs identified in other species via the OPTIC pipeline.

PODXL (Human)   Podxl (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1602 bp    Location:109902..153222   Strand:+
Raw sequence 
>bmy_12005
ATGCGCTCCGCGCTGATGCTCTCGGCGTTTCTGCTGCTGCTGCCGCTGTCGCTCTCCCAGAATGAAGTCAAGCCTATTGGTGAAACAGCTGCCGAAGAAAGCAAGCCAGACACAGTTCCACCATCCAGTGCTCAAAACACAGTCAAACAAAGCACAGTCCCACCATCCACTGATAAAAGTGTGACTGCATTGGAGACCAAGGGAAGCACACCCACAACGCCTAGCACCTCAAGGGCAGTGCCACCCTCAGCCCAGCAAAGCACAACTGCAGCAGCCAGTGGCAAAGATGAGAAACCAGCCACAGGCAACTCTGCTATAACTACTAAAGACTCAAAGGATTCTACAACCACACCAACCACTGTCTCGACAAAGCCTGAAACCACAAGCAGCCAGAGTGGAATTAAAAGCAATTCAGCTAAATCTGGAACCCAGAGTAGCCACGGTGTGACCACAAGCAGTGTGATCACTAAGGAAGGAAATCAGGCAGCCTCTGACCTTCCAAATCTGGGTGACACCTCAGTCATCACGCCTGCCCTTCCTTCCTTGCCCACCCCAGCAAGCACTCACCAGCCTAGCACGGTCCCTGTGACTTCGGTCCCTGTGACTTCGGAGCCCGCAGGGAGCTCCTCCGAGGGACCAAACAAAATTACAGCAGCTACAAGTTTAGGCACAATGGCGGGTCCCACCTTCACGACGCAGGGGACGCTGACCACACTAACACCATGGGTTACCTCACAAGGAACTCAACACACCTCCAGCAAGACGCCAGCTGTCACTGGCACCTCTGGGGCTCTGCAGCCTACAGGCTCTTCATCGGGACCTGGGACCACATCTCCTGCCAGGGGACCCACAAGCTCCAACACTCATTTGGAGTCAACTGCCCCCCAAGGCTCCAGTATCCCTTCTCCCACCTCAGTAATTTCAGCAGGTGTGGGACAGATACAGTGCGATTCTCCCGAAAAGCTGAATGAGAAGATGCTCGTCCTGAACATCTCGAAAACTGATGTCTCGAAAACCAACATCTGTAATGCGACCGCTTCGAATGACAAACTGGTCACACTTTTGTGCCGAGCAGCAAAAGCCTCCTTCAACCCAGCTCAAGATCAGTGCCATATACAGCTGGCACCTGTTCCAGAAATCCAGGCCGTGGCAATCAAACAAATCACTATCTGCACAAACCTCTTTCCCACGGACGTTTATGAATTGCTGAAAGACAAATGGGATGACCTAAAAGAGGTGGGAGTCAATGACATGCAGTTTGAGGGTCAAGGACCACCAGAAGAGACCGAGGACCGGTTCAGCATGCCCCTCATCATCACTATTGTCTGCATGGCATCCTTCTTGCTCCTGGTCGCGGCCCTTTATGGCTGCTGCCACCAGCGCCTCTCCCAGAGGAAGGACCAGCAACGACTAACAGAGGAGCTACAGACGGTGGAGAATGGTTACCACGACAATCCAACCCTGGAAGTGATGGAGACCTCATCAGAGATGCAGGAGAAAAAGGTGGTCAACCTGAATGGGGAGCTGGGGGACAGCTGGATCGTCCCTCTGGACAACCTGACCAAGGATGACCTAGATGAGGAGGAAGACACACACCTCTAA

Related Sequences

bmy_12005T0 SequenceType object (3)

Length: 534 aa      View alignments
>bmy_12005T0
MRSALMLSAFLLLLPLSLSQNEVKPIGETAAEESKPDTVPPSSAQNTVKQSTVPPSTDKSVTALETKGSTPTTPSTSRAVPPSAQQSTTAAASGKDEKPATGNSAITTKDSKDSTTTPTTVSTKPETTSSQSGIKSNSAKSGTQSSHGVTTSSVITKEGNQAASDLPNLGDTSVITPALPSLPTPASTHQPSTVPVTSVPVTSEPAGSSSEGPNKITAATSLGTMAGPTFTTQGTLTTLTPWVTSQGTQHTSSKTPAVTGTSGALQPTGSSSGPGTTSPARGPTSSNTHLESTAPQGSSIPSPTSVISAGVGQIQCDSPEKLNEKMLVLNISKTDVSKTNICNATASNDKLVTLLCRAAKASFNPAQDQCHIQLAPVPEIQAVAIKQITICTNLFPTDVYELLKDKWDDLKEVGVNDMQFEGQGPPEETEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNPTLEVMETSSEMQEKKVVNLNGELGDSWIVPLDNLTKDDLDEEEDTHL*