Part of scaffold_679 (Scaffold)

For more information consult the page for scaffold_679 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APOB ENSTTRG00000000080 (Bottlenosed dolphin)

Gene Details

apolipoprotein B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000072, Bottlenosed dolphin)

Protein Percentage 94.68%
cDNA percentage 96.53%
Ka/Ks Ratio 0.56905 (Ka = 0.0269, Ks = 0.0472)

APOB ENSBTAG00000008505 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000038799, Cow)

Protein Percentage 84.85%
cDNA percentage 89.81%
Ka/Ks Ratio 0.45344 (Ka = 0.0851, Ks = 0.1877)

APOB  (Minke Whale)

Gene Details

apolipoprotein B

External Links

Gene match (Identifier: BACU010243, Minke Whale)

Protein Percentage 97.69%
cDNA percentage 98.45%
Ka/Ks Ratio 0.62381 (Ka = 0.0132, Ks = 0.0211)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 7626 bp    Location:139127..99668   Strand:-
>bmy_12021
ATGCTAGGATCTGCAAAAACAACGTATGACCACAGGAATACACTCACGTTTTCAGGTGATGGGTCTCTACACCACAAATTCCTGGATTCACATGTCAAATTCAGTCATGTAGAGAAAATTGGAAACAATCCAGCCTCAAAAGGTTTTCTAACATTCGATGCATCGAGTGCCTGGGGACCACAGATATCTGCTTCAGTCCATTTGGACTCAAAAAAGAAACAGCATTTGTATGTCAAAGAAGTCACGATTGATGGGCAGTTCAGAGCCTCTTCGTTCTACGCTAAAGGCGCATATGACCTGTCTTATCAGAGGGATCCTGCCACTGGCCAGCTAAATGGGGAATCCAACCTGAGGTTTAACTCCTCCTACGTCCAGGGCACCAACCAGATAACAGGAAGATACGAAGATGGAACAGTCTCTATTACGTCCACCTTGGATCTGCAAGGTGGCCTCATGAAAAATACCGCTTCACTGAAATATGAGAACTATGAGCTGACTCTGAAATCTGACACCAGTGGGAAGTATGAGGACTTTGCCACTTCGAACAAGATGGATCTGACCTTCTCTAAGCAAAGTGCATTGCTACGTTCTGAGTATCAGGCTGATTACAAGTCACTGAAGTTCTTCACCCTGCTTTCTGGATCACTAAACTCCCATGGTCTTGAGTTAAATGCTGACATCTTGGGCACTGACAGAATTAATAGTGGTGCTCACAAGGCAACACTAAGGATTGCCCAAGATGGAATGTCTACCAGTGCAATGACCAACTTGAAGTATAGTCCCCTAATGCTGGAGAATGAACTCAATGCCGCGCTTGGCCTCTCTGGGGCATCCCTGAAATTAACAGCAAATGGCCGCTTCCGGGAACACCATGCAAAATTCAGTCTAGATGGAAGAGCTACCCTCACAGAGGTGTCACTGGGAAGTGCTTATCAGGCCATGATTCTGGGTGTTGACAGCAAAAACATTGTCAACTTCAGAATCAACCAGGAAGGACTCAAGCTTTCAAATGACATAATGGGCTCATACGCGGAAATGAAACTTGACTACACAAACAGTCTAAACATTGCAGGGTTATCACTGGACTTCTCTTCCAAACTTGACAACATTTATAGCTCTGACAAGTTTTATAAGCAAAATTTTAATCTACAGTTACAGCCCTATTCCCTGGTAACTACTTTAAACAATGACTTGAAATTCAGTGCTCTGGATATGACCAACAATGGAAAATTACGGCTTGAACCTCTGAAGCTGAATGTGGGTGGGACCATAAAAGGAGCCTACCAAAATAATGAACTAAAACACATCTACACTCTTTCTTATGCTGACTTATCAGCAAGTTATAAAGCAGACACTGTAGCTAAGGTGCAGGGGACAGAGTTTAGCCATCGGCTCAACACTAACATCGCTGGGCTTGCTTCAACCGTTGACATCAGTACAAACTACAATTCGGACTCCCTGCATTTCAACAATGTTTTCCACTCTGCAATGGCCCCATTTACAATGACCGTCGACACGCATACAAATGGCAATGGGAAACTGGTTCTCTGGGGACAACACACTGGGCAGCTGTATAGCAAATTCCTGTTGAAAGCAGAACCTCTGGCCTTTACTTTCTCTCATGATTACAGAGGATCCACAAGTCACCATCTCGTGTCCAGGAGGAGCATCAGTACTGCTCTTGATCATAAAATCAGTGCCCTGCTCACTCTGGCCGAGCAGACAGGCACCTGGAAACTCAAGACCCAGTTGAACCAAAATGAATACAGCCAGGACTTCCGTGCTTACAACACTAAAGACAAAGTTGGTGTTGAGCTCAGTGGACGAGCCCTGGCTGACCTCACTGTGCTGGACTCCCCTATTACAGTGCCACTTTTACTCAGTGAGCCCGTCAGTGTAATTGACGCTTTAGAGCTGAGGGACGCTGTTGACCAGCCCCAAGAATTCACTCTTGTTGCTTCTGTAAAATATGATAAGAACCAAGACGTTCACACCATCAACCTCCCATTCTTTAAAATCCTGCCAGAATATTTTGAGAAGACTCGAGAGGTAGTTATAGGTGCACTGGAAGCTATACAGAAAGAATTGAAACACATCAATATTGATGAACGCATGAGGAAATACATAGCAGCCTTGGACAAACTCCCACAGCAAGTTAATGATTATCTGAATGCTTTCAACTGGGAGAAACAAGTTTTGAGTGCCAAGGAGAAACTAACTGCTTTCACAGAAAATTATAGAATTACAGAAAATGATCTGCAGATCGCATTAGACAATGCCAAAATCAACCTTAATGGAAAACTATCTCAGCTACAAACATATGTGATACAATTTGATCAGTATATTAAAGATAATTATGAYTTACATGATTTTAAGGCAGCTATTGCTAAGATTATTGATCGAATCATTGAAAAATTGAAAACTCTTGATGAACATTATCATATCCGTGTAACTGTACAAAAAAAAATCCGTGATCTGTATTTTTTTATTGAAAATATTGATTTTAACAAAATTGGAAGTAGTACTGCATCTTGGATTCAAAATATGGATACTAAGTATCAAATCAGAATCCAGATACAAGAAAAATTGCAGCAGCTCAATGCACAGATTCAGAATGTAGACATCCAGCACCTTGCTGAAAAGCTCAAACAACAGGTTGAAGCTATTGATGTCAGAGTGCTTTTAGATGAGTTGAGAACTACAATCTCATTTCAAAGAATAAAGGAAATTATTGAGCATGTCAAATACTGTGTTACAAATCTTTTTGAAGATTTTGAAGTAATTGAGGAAATCAATGCTTTCAGAGTCATGGTCCATGAGTTCACTGAGATGTATAAAATAGACCACCACATCCAGGTTTTAATGGATAAATCAGTGCAGTTGGCCCACCAATATAAGCTGCAGGAGACTGTTCAGAAGCTAAGCAGTGTCCTACAACAAGTCAAGATGGCAGACCTTGTTGAGGAATTGATTGGGTTTACCGACCATGCTCTCAAGCAGCTTGAAGCATTGTCTTTTAAACAATTCATTGAAGAAATAAACAGATTCCTTGACATGCTGGTAAAGAAATTAAGGTCATTTGATTACCACCAGTTTGTAGATGAAACCAATAACAAAATTCGTGAGGTGACTCACAGAATCAATGGTGAAATTCAGGCTCTGGGACTTCCACAGAAAGCTAAAGCACTAAAACTGTTTACAGAGGACGTCAAGGCCACAGTCTCAATCCATCTGGAAAACCTAAAGGCCACCAAAATAACCTTATTCTTTGATTGGTTACAGGAGGTTTCTGTAGTTCACATGAAAGCCAAATTCCAAGAGACCCTGGAAGATATACGAGACCGRGTGTATCAAATGGATATACAGCAGGAAGTCCAGCGATACCTGTTCCTAGTTGGCCAGGTTTACAGCACACTTGTCACCTATATTTCTGATTGGTGGACTCTTGCTGCTAAGAACTTTACTGACTTTGCAGAACAGTATTCTATCCAAGACTGGGCCAAAAACCTGAAAACATTAGTAGAACAAGGGTTCACTGTTCCCAAAATCCAGACCACCTTCGGGACCATACCTGCCTTTGAAGTCAGTCTCCGTGCCCTTCAGGAGGCTACGTATCAGACTCCTGACTTCATTGTCCCCCTGACAGATCTGAAGATTCCATCYGTTCAGATCAACTTCAAAAAGTTGAAAGATATAAAAATCCCATCCAGGTTTTCCACGCCAGAATTTACTGTCCTCAATACCTTCCACATCCCTTCCTTTACAGTTGACTTGGTAGAAATAAAAACAAAGATCATCAGAACCATTGACCAAATGCTGAACAGTGAGCTGCAGTGGCCAGTCCCGGAAGTGTACCTGAGGGATCTGAGCGGGGTGGACACCATTCTTGCCAGAATCACTCTGCCAGACTTCCATTTACCAGAAATCACAATTCCAGAACTTGTCATCCCACATCTGAATGTTACAGATTTTCAAGTTTCTGACCTTCACATACCAGAATTCCAGCTTCCCCACATCTCACACACACCTGAAGTACCTACTTTTGGCAAGCTGTATGGCATTTTGAAAATCCAATCTCCCCTTCTCATATTAGGTGCAAATGCTGACATTCAGAATGTAACTGCTTCAGCGAACCAGGCAGAGATTGAGGCTTCCGTCACTGCCAAAGGAGAATCCAAATTAGAAGTTCTCAATTTTTATTTTCAAGCAAATGCACAACTTTCAGACCCTAAGATTAATCCACTGGTTCTGAAGGAATCTATGAGGTTCTCCAGCAAGTACCTGAAAACAGAGCATGAGAGTGAAGTGCTATTTGTTGGAAATGCTATTGAGGGAAAATCAAACACAGTGGCAGGTTTACACACAGAAAAAAATACACTGGAGCTTAGTAACAGTGTGCTCGTCAAGGTAAATAATCAGCTTACCCTGGACAGCAACACAAAGTACCTCCACAAATTGAACATCCCCAAACTGGACTTCTCCAGCCAGGCTGACCTGCGCAGTGAAATCAAGACCCTGTTGGAAGCTGGACACCTAGCATGGACTTCTTCTGGAACAGGGTCCTGGAAATTGGCCTGCCACAAATTCTCAGATGAGGGAACACATGAATCCCAAAGTAACTTTACTGTGGAAGGACCCATCACGTCCTTTGGATTGTCTAATAAGATCAATAGCAAACACCTAAGAGTAAACCAAAATATAGTTTATGAATCTCGCTTCCTCAACTTTTCTAAATTTGAAATCCAGTCACAAGCTGAATGCCAGTACTTGGGCCGCAGTGTTCTAACTGCTAAAGGTATGGCACTGCTTAGAGAAGGGAAGGCAGAGATAACTGGCAACCATGATGCGCATTTAAATGGAAAGGTTATTGGAACTTTGAAAAATTCTCTTTTCTTTTCAGCACAGCCACGTGCGCTTACTGCATCCACAAACAATGAAGGGAACTTGAGAGTTAGTTTTCCATTAAAATTGACAGGGAAGATAGACTTTCTGAATAATTATGCACTGTTTCTGAGTCCTAGTGCCCAGCAAGCAAGTTGGCAAGCAAGTGCCAGGTTCAATCATTATAAGTACAATCAAAATTTCTCTGCTGGAAACAACGAGAAAAGCATCGAGGCCCACATAGGAATAAATGGAGAAGCCAACCTGGATTTTTTAAACATTCCTTTAACAATCCCTGAAATGACTCTACCTTATACAAAGCTCACAACACCCCAGGTGAAAGATATCTCCTTATGGGAAAAGACAGGCTTGAAGGAATTCTTGAAAACAACAAAGCAATCGTTCGATTTAAGTGTAAAGGCTCAGTATAAGAAAAACAAAGACAAGCATTCCATCCCAGTTCCTCTGGATGTACTTTATGCATTTATCAATCGTAACATCAATTCCTTCAACAGGCGTTTCGAGACAGTCAGAAACAGGGCATTAGATTTTTTTATCAAATCCTACAATGAAGCAAAAATTACATTTGATAAGTACAAGGTTGAAAAATCCCTCAACCAGCAACCCAGGATCTATAAAATTCCTGGATACACTATTCCAGTTACCAACATTGAAGTGTCTCCATTCACAGTGAAGATGTTGACATTCGGGTATGTGATCCCCAAAGAGATCAGCACCCCCAGCATCACCATGCCGGGTTCTGGCGTCTATGTGCCCTCATACACATTAGTCCTGCCATTCCTAGAGCTGCCAACCCTTCATGTCCCTAGGAATCTTCTTGAGCTTTCTCTTCCAGAGTTCAAGGTATTGAGTACCACAAACAAAATTTTAATTCCAGCCATGGGCAATATTACCTATGATTTCTCCTTTAAATCAAGTGTCATCACACTGAATACCAATGTTGGTCTTTATAACCAATCAGATATTGTGGCTCATTTTCTTACTTCCTCTTCTTCTGTCATTGATGCACTGCAGTACAAATTAGAGGGCACCTCAAGTTTGACGAGGAAAAGAGGGTTGAAGTTAGCCACAGCTTTGTCTCTGAGTAACAAACTCGTGGAGGGCAATCATGACAATACTATTAGCTTCACCAAGAAAAACATGGATGCATCCATGACAACAACTGCAAGAGTCCAAATTCCACTTTTGAGAATGAATTTCAAGCAAGAACTTAATGGAAATACCAAGTCAAAACCTACTGTCTCTTCATCCATTGAATTAAAGTATGATTTCAGTTGGCCCCATGTGTACACTACTGCTACAGGGGCGTTTGACCACAAGCTCAGCTTAGAATGTCTCACCTCTTACTTTTCCCTTGAGTCATCTACCAAAGGAGGTGTCAAGGCTTTTATCCTTTCAAAGGAATATTCAGGAACTCTTGCCAGTGAGGCCAGCACTTACTTGAATTCCAAGGGTACTCGATCTTCTGTGAAGCTGCTAGGAGCTTCCAAAGTAGATGGTATCTGGAATCTTGAAGTAAAAGAAAATTTTGCTGGAGAAACCACTCTCCAACGCATATATGCCATCTGGGAACAAAATACGAAAAACCATTTACGGCTAGGGGGCCTCTTTTTAACATCTGGAGAGCATACAAGCAAAGCCACCCTGGAACTTTCCCTATGGGAAATATCAGCCCTTGTTCAGGTCCGTGCACGTCAGCCCAGTTCCCTTCTTAACATCAATTACCTTGGCCAGGAAGTGTCCCTGAATGCTAACACTGAGAACCAGAAAATCAGCTGGAAAAGTCAGGTCCAGGTTCATTCTGGGTCTCTCCAGAACAACATACAGCTTTCCAATGACCAAGAAGAGGCACGCCTTGACATGGCAGGCTCCTTAGAAGGGTACCTATGGTTCCTCAAAGATGTTGTCCTACCAGTTTATGACAAGAGCTTATGGGACCTCCTAAAGCTGGATGTAACCACCAACAACGATAGGAAACAGTATCTCCGTGCTTCAACTGCCCTTGTATATACCAAAAACCCCAATGGCTATCCTGTTTCTATCCCCGTGCGAGAATTGGCTGATAAATTCATCATTCCTGGACTGAAACTAAATAACCTAAATTCCGTTAACGTCACACCTACATTCCACGTACCCTTTACAGATCTTCAGGTTCCATTCTACATACTTGACTTCAGTGAAATAAAAATCTACAAGAAGCTAAGTACTTTGCCATTTGCCCTCAACATACCAACACTACCCAAAGTGAAATTCCCCAAAGTTGATGTGTTAGCACAATATTCTAAACCAGAAGTCTCCTCAGTTCCCTTTTTTGAGATAACTGTGCCTGCATCTCAGTTAACTGTGTCCCACTTCACCCTTCCAAAAAGTATTTCAGTTGGCAGTGCCGTTTTGGATCTAAATGTGGCCAGCAACATTGCAGACTTCAAGTTGCCAACCATCACCATGCCTGAGCAGACTATTGAGATTCCTTCCATGAAGTTCTCTGTACCTGCTGGAATTTTCATTCCTTCCTTTGGAACACTGACTGCACGTTTCGAGGTGGCCTCTCCCTTGTATAATGCCACTTGGAGTGCTGGTTTGAAAAACAAAGAAGATCACGTTGAAACCTTCCTGGATTCCACATGCAGCTCCACCATTCAGTTCCTGGAATATGACCTAAACGGTAAGGAAATTTCCTGCCTCCCCTACGTGCTTTATTTCTTCAGTGCGAGTTGTGAATAA

Related Sequences

bmy_12021T0 Protein

Length: 2542 aa      View alignments
>bmy_12021T0
MLGSAKTTYDHRNTLTFSGDGSLHHKFLDSHVKFSHVEKIGNNPASKGFLTFDASSAWGPQISASVHLDSKKKQHLYVKEVTIDGQFRASSFYAKGAYDLSYQRDPATGQLNGESNLRFNSSYVQGTNQITGRYEDGTVSITSTLDLQGGLMKNTASLKYENYELTLKSDTSGKYEDFATSNKMDLTFSKQSALLRSEYQADYKSLKFFTLLSGSLNSHGLELNADILGTDRINSGAHKATLRIAQDGMSTSAMTNLKYSPLMLENELNAALGLSGASLKLTANGRFREHHAKFSLDGRATLTEVSLGSAYQAMILGVDSKNIVNFRINQEGLKLSNDIMGSYAEMKLDYTNSLNIAGLSLDFSSKLDNIYSSDKFYKQNFNLQLQPYSLVTTLNNDLKFSALDMTNNGKLRLEPLKLNVGGTIKGAYQNNELKHIYTLSYADLSASYKADTVAKVQGTEFSHRLNTNIAGLASTVDISTNYNSDSLHFNNVFHSAMAPFTMTVDTHTNGNGKLVLWGQHTGQLYSKFLLKAEPLAFTFSHDYRGSTSHHLVSRRSISTALDHKISALLTLAEQTGTWKLKTQLNQNEYSQDFRAYNTKDKVGVELSGRALADLTVLDSPITVPLLLSEPVSVIDALELRDAVDQPQEFTLVASVKYDKNQDVHTINLPFFKILPEYFEKTREVVIGALEAIQKELKHINIDERMRKYIAALDKLPQQVNDYLNAFNWEKQVLSAKEKLTAFTENYRITENDLQIALDNAKINLNGKLSQLQTYVIQFDQYIKDNYDLHDFKAAIAKIIDRIIEKLKTLDEHYHIRVTVQKKIRDLYFFIENIDFNKIGSSTASWIQNMDTKYQIRIQIQEKLQQLNAQIQNVDIQHLAEKLKQQVEAIDVRVLLDELRTTISFQRIKEIIEHVKYCVTNLFEDFEVIEEINAFRVMVHEFTEMYKIDHHIQVLMDKSVQLAHQYKLQETVQKLSSVLQQVKMADLVEELIGFTDHALKQLEALSFKQFIEEINRFLDMLVKKLRSFDYHQFVDETNNKIREVTHRINGEIQALGLPQKAKALKLFTEDVKATVSIHLENLKATKITLFFDWLQEVSVVHMKAKFQETLEDIRDRVYQMDIQQEVQRYLFLVGQVYSTLVTYISDWWTLAAKNFTDFAEQYSIQDWAKNLKTLVEQGFTVPKIQTTFGTIPAFEVSLRALQEATYQTPDFIVPLTDLKIPSVQINFKKLKDIKIPSRFSTPEFTVLNTFHIPSFTVDLVEIKTKIIRTIDQMLNSELQWPVPEVYLRDLSGVDTILARITLPDFHLPEITIPELVIPHLNVTDFQVSDLHIPEFQLPHISHTPEVPTFGKLYGILKIQSPLLILGANADIQNVTASANQAEIEASVTAKGESKLEVLNFYFQANAQLSDPKINPLVLKESMRFSSKYLKTEHESEVLFVGNAIEGKSNTVAGLHTEKNTLELSNSVLVKVNNQLTLDSNTKYLHKLNIPKLDFSSQADLRSEIKTLLEAGHLAWTSSGTGSWKLACHKFSDEGTHESQSNFTVEGPITSFGLSNKINSKHLRVNQNIVYESRFLNFSKFEIQSQAECQYLGRSVLTAKGMALLREGKAEITGNHDAHLNGKVIGTLKNSLFFSAQPRALTASTNNEGNLRVSFPLKLTGKIDFLNNYALFLSPSAQQASWQASARFNHYKYNQNFSAGNNEKSIEAHIGINGEANLDFLNIPLTIPEMTLPYTKLTTPQVKDISLWEKTGLKEFLKTTKQSFDLSVKAQYKKNKDKHSIPVPLDVLYAFINRNINSFNRRFETVRNRALDFFIKSYNEAKITFDKYKVEKSLNQQPRIYKIPGYTIPVTNIEVSPFTVKMLTFGYVIPKEISTPSITMPGSGVYVPSYTLVLPFLELPTLHVPRNLLELSLPEFKVLSTTNKILIPAMGNITYDFSFKSSVITLNTNVGLYNQSDIVAHFLTSSSSVIDALQYKLEGTSSLTRKRGLKLATALSLSNKLVEGNHDNTISFTKKNMDASMTTTARVQIPLLRMNFKQELNGNTKSKPTVSSSIELKYDFSWPHVYTTATGAFDHKLSLECLTSYFSLESSTKGGVKAFILSKEYSGTLASEASTYLNSKGTRSSVKLLGASKVDGIWNLEVKENFAGETTLQRIYAIWEQNTKNHLRLGGLFLTSGEHTSKATLELSLWEISALVQVRARQPSSLLNINYLGQEVSLNANTENQKISWKSQVQVHSGSLQNNIQLSNDQEEARLDMAGSLEGYLWFLKDVVLPVYDKSLWDLLKLDVTTNNDRKQYLRASTALVYTKNPNGYPVSIPVRELADKFIIPGLKLNNLNSVNVTPTFHVPFTDLQVPFYILDFSEIKIYKKLSTLPFALNIPTLPKVKFPKVDVLAQYSKPEVSSVPFFEITVPASQLTVSHFTLPKSISVGSAVLDLNVASNIADFKLPTITMPEQTIEIPSMKFSVPAGIFIPSFGTLTARFEVASPLYNATWSAGLKNKEDHVETFLDSTCSSTIQFLEYDLNGKEISCLPYVLYFFSASCE*