Sequence detailsbmy_12072 (Coding sequence)

Part of scaffold_703 (SequenceType object (1))

For more information consult the page for scaffold_703 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM56ENSBTAG00000012038 (Cow)

Gene Details

E3 ubiquitin-protein ligase TRIM56

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015969, Cow)

Protein Percentage 93.99%
cDNA percentage 91.48%
Ka/Ks Ratio 0.06469 (Ka = 0.0274, Ks = 0.4242)

TRIM56 (Minke Whale)

Gene Details

tripartite motif containing 56

External Links

Gene match (Identifier: BACU012062, Minke Whale)

Protein Percentage 98.28%
cDNA percentage 98.28%
Ka/Ks Ratio 0.12293 (Ka = 0.0073, Ks = 0.0596)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM56 (Human)   Trim56 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2268 bp    Location:41914..45329   Strand:+
Raw sequence 
>bmy_12072
ATGGTTTCCCAGGGCTCCTCACCCTCCCTGCTGGAGGCCCTGAGCAGCGACTTCCTAGCCTGTAAAATCTGCCTGGAGCAGCTGCGGGTGCCCAAAACGTTGCCCTGCCTGCATACCTACTGCCAGGACTGCCTGGGCCAGTTGGCCGAGGGCAGCCACCTCCGATGCCCTGAGTGCCGCGAGTCCGTGCCTGTGCCGCCCACGGGCGTGGCTGCCTTCAAGAGCAACTTCTTCGTCAACGGGCTCCTGGATTTGGTGAAGGCCCGAGCCGGTGGAGACCTGCGCGCAGGGAAGCCGGCCTGTGCGCTGTGCCCGCTGATGGGGGGCGCCAGCGCCGGGGGGCCAGCCACAGCCCGGTGCCTGGACTGCGCCGACGACTTGTGCCAGGCCTGTGCCGATGGGCACCGCTGCACCCGGCAGACCCACAGCCACCGAGTGGTGGACCTGGTGGGCTACAGGGCAGGGTGGTACGACGAGGAGGCCCGGGAGCGCCAGGCGGCCCAGTGTCCCCAGCACCCGGGGGAGCCCCTGCGCTTCCTTTGCCAGCCCTGCTCCCAGCTGCTGTGCCGGGAGTGTCGCCTGGACCCCCACCTGGACCACCCCTGCCTGCCCCTGGCCGAGGCTGTGCGTGCCCGGAGGCCGGGCCTCGAGGAGCTCCTGGCGGGCGTAGACAGCAATCTGGCCAAGCTGGAGGCCACCCGGCTGGCGGAAAAGGAAGCCTTGGCCTGTCTGCGGGAGCAGGCAGCCAAGGTGGGCACGCAGGTGGAAGAGGCGGCCGAGGGGGTCCTCCGGGCCCTCCTGGCCCAGAAGCAGGAGGTGCTGGGGCAGCTACGGGCCCACGTGGAGGCTGCCGAGGAAGCTGCTCGGGAGAGGCTGGGGGAGCTGGAGAGCCGGGAACAGGTGGCCAGGGAGGCGGCCGCCTTTGCCCGTCGCGTGCTCAGCCTGGGTCGCGAGGCCGAGATACTCTCGCTGGAGGGGGCGATTGCCCAAAGGCTTCAGCAGCTGCAGCGCTGTCCCTGGATGCCTGGGTCAGCCCCCTGCCTGCTGCCCCGGCTGGAGCTCCATCCTGGACTCCTGGACCAGAAGTGCCACCTGCTAAGGCTCTCCTTTGAGGAGCAGCAGCCCCAGAAGGCCAGCGGGAAAGACGGAGCCAGAAGCCAGGGAGGCGACGAAACCCAGCCCCAGAGCAGGGATGGAGCCCCGACCCCGAAGCAGGACGGAGCGCAGACGCCCCAAGAAGATGGAGCCCAGACCCTAAAGGCGGAGAGAGCCGAGACTCCCCAAGAAGACGGAGCCAAGACCCCGAAAGAGGGCAGAGCCCAGACACCCCAAGAAGATGGAGGAGCCCAGTCCCCAAGGGGTGGCAGATCCAACAAGAAGAGGAAATTCAAAGGCAGGCTCAAGTCCATTTCTCGGGAGCCCAGCCCAGCACCTGGGCCAAACCTGGAGGGCTCTGGCCTCCTCCCCAGGCCCATCTTTTTCTGCAGCTTCCCCACGCGGATGCCGGGGGACAAGCGGTCTCCCCGGATCACTGGGCTCTGTCCCTTTGGCTCCCGGGAGATCCTGGTGGCAGATGAGCAGAACAGGGCCCTGAAGCGCTTCTCCCTCAATGGCGACTACAAGGGCGCGGTGCCCGTCCCTGAGGGCTGCTCCCCATGCAGCGTGGCCGCCCTGCAGGACGCCGTGGCCTTCTCGGCTGGCGCTCGGCTCTATCTCATCCGCCCCAACGGCGAGGTGCAGTGGCGCCGGGCGCTGAGCCTCTGCCAGGCCAGCCACGCCGTGGCCGCCATGCCGAGCGGGGACCGGGTGGCTGTCAGCGTGTCAGGCCATGTGGAGGTGTACAACATGGAAGGCAGCCTGGCCACCCGGTTTATCCCTGGAGGCAAGGCCAGCCGGGGCCTGCGGGCACTGGTGTTCCTGACCACCAGCCCCCAGGGCAATTTCGTGGGGTCGGATTGGCAGCAGAATAGCTTGGTGGTCTGTGACGGGCTGGGCCAGGTGGTTGGGGAGTACCGGGGGCCGGGCCTGCACGGCTGCCAGCCAGGCTCCGTGTCCGTGGATAAGAAGGGCTACATCTTTCTGACCCTTCGAGAGGTCAACAAGGTGGTGATCCTCGATCCGAAGGGGTCGCTGCTCGGTGACTTCCTGACGGCCTATCACGGCCTGGAAAAGCCCCGGGTGACCACCATGGTGGATGGCAGGTACCTGGTCGTGTCCCTCAGTAATGGGACCATCCATGTCTTTCGGGTCCGCCCTCCTGACAGTTAA

Related Sequences

bmy_12072T0 SequenceType object (3)

Length: 756 aa      View alignments
>bmy_12072T0
MVSQGSSPSLLEALSSDFLACKICLEQLRVPKTLPCLHTYCQDCLGQLAEGSHLRCPECRESVPVPPTGVAAFKSNFFVNGLLDLVKARAGGDLRAGKPACALCPLMGGASAGGPATARCLDCADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEPLRFLCQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEELLAGVDSNLAKLEATRLAEKEALACLREQAAKVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLGELESREQVAREAAAFARRVLSLGREAEILSLEGAIAQRLQQLQRCPWMPGSAPCLLPRLELHPGLLDQKCHLLRLSFEEQQPQKASGKDGARSQGGDETQPQSRDGAPTPKQDGAQTPQEDGAQTLKAERAETPQEDGAKTPKEGRAQTPQEDGGAQSPRGGRSNKKRKFKGRLKSISREPSPAPGPNLEGSGLLPRPIFFCSFPTRMPGDKRSPRITGLCPFGSREILVADEQNRALKRFSLNGDYKGAVPVPEGCSPCSVAALQDAVAFSAGARLYLIRPNGEVQWRRALSLCQASHAVAAMPSGDRVAVSVSGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTTSPQGNFVGSDWQQNSLVVCDGLGQVVGEYRGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGRYLVVSLSNGTIHVFRVRPPDS*