Sequence detailsbmy_12080 (Coding sequence)

Part of scaffold_703 (SequenceType object (1))

For more information consult the page for scaffold_703 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLDN15ENSTTRG00000004796 (Bottlenosed dolphin)

Gene Details

claudin 15

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004520, Bottlenosed dolphin)

Protein Percentage 66.84%
cDNA percentage 70.29%
Ka/Ks Ratio 0.33975 (Ka = 0.1534, Ks = 0.4514)

CLDN15ENSBTAG00000000345 (Cow)

Gene Details

claudin-15

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000000450, Cow)

Protein Percentage 69.43%
cDNA percentage 76.86%
Ka/Ks Ratio 0.47688 (Ka = 0.2468, Ks = 0.5176)

Additional orthologs identified in other species via the OPTIC pipeline.

CLDN15 (Human)   Cldn15 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 582 bp    Location:146561..143241   Strand:-
Raw sequence 
>bmy_12080
ATGTCGGTGGCTGTGGAGATCTTCGGCTTCTTCATGGCAGCCCTGGGGCTGCTGATGCTCGGGGTGACCCTGACACACAGCAACTGGCGAGTGTCCACCGTGCACGGGAATGTCATCACCACCAGCACCATCTTCGAGAACCTCTGGTATAGCTGTGCCACCGACTCCCTCGGAGTCTACAACTGCTGGGAGTTCCCGTCCATGCTGGCCCTCTCTGGGTACATCCAGGCCTGCCGGGCGCTCATGATCACCGCCATCCTCCTGGGCTTCCTGGGCCTCTTCCTAGGCATGGTGGGGCTGCGCTGCACGAACATTGGGGGCCTGGAGCCCTCCAGGAAAACCAAGCTGGCGGCCACCGCAGGGGCCCTACACATACTGGCTGGTAATTGGGGGAAAGTGATGGGGGGACGCTGTGCCGCAGTGGGGGTGGGGTGGCCCTTGGCCCAGACTGCAGGGTTGCCTCACCTTCCCCTTTGCATTGACACCTGCCCTCTCTCCCTGCTCACCCCACTCTCACCCATACTCACCAAATCCCTTGGTTACATATCAGTCCATCAGCAATGTTTCTTGAGCCCGCACTAG

Related Sequences

bmy_12080T0 SequenceType object (3)

Length: 194 aa      View alignments
>bmy_12080T0
MSVAVEIFGFFMAALGLLMLGVTLTHSNWRVSTVHGNVITTSTIFENLWYSCATDSLGVYNCWEFPSMLALSGYIQACRALMITAILLGFLGLFLGMVGLRCTNIGGLEPSRKTKLAATAGALHILAGNWGKVMGGRCAAVGVGWPLAQTAGLPHLPLCIDTCPLSLLTPLSPILTKSLGYISVHQQCFLSPH*