Sequence details bmy_12112 (Coding sequence)

Part of scaffold_714 (Scaffold)

For more information consult the page for scaffold_714 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RAG1 ENSTTRG00000014075 (Bottlenosed dolphin)

Gene Details

Recombination activating protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013344, Bottlenosed dolphin)

Protein Percentage 79.77%
cDNA percentage 80.98%
Ka/Ks Ratio 0.42468 (Ka = 0.0187, Ks = 0.044)

RAG1 ENSBTAG00000040293 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000048319, Cow)

Protein Percentage 92.81%
cDNA percentage 91.59%
Ka/Ks Ratio 0.12523 (Ka = 0.0335, Ks = 0.2674)

RAG1  (Minke Whale)

Gene Details

recombination activating gene 1

External Links

Gene match (Identifier: BACU008911, Minke Whale)

Protein Percentage 98.37%
cDNA percentage 98.56%
Ka/Ks Ratio 0.22666 (Ka = 0.0055, Ks = 0.0241)

Additional orthologs identified in other species via the OPTIC pipeline.

RAG1 (Human)   Rag1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3183 bp    Location:109530..75249   Strand:-
Raw sequence 
>bmy_12112
ATGCTAATGAGAGAAATGTACCAAGCTAAAGAAATCAGTACCTCAGCCAGCATGGCGGTCTCTTTGCCACCCACTCTGGGACTCAGTTCCGCCCCAGACGAAATCCAGCACCCACATATTAAATTTTCAGAATGGAAATTTAAGCTATTCAGGGTGAGATCCTTTGGAAAGGCACCTGAAAATGCTCAAGCGGAAAAGCAAGATTCCTCCGAGAGGAAACCCTCTCTAGAGCAGTCTCCAGCAGTCCTGGACAAGCCTGGTGGTCAGAAACCAGCTCTGACTCAACCGGCATTGAAGCCCCACCCAAAGTTTCTGAAGAAATCCCATGATGACAGGAAAGCAAGAGACAAAGCCATGCACCAAGCCAACCTGCGACATCTCTGCCGCATCTGCGGGAATCCTTTCAAAGCTGATGGGCACAATAGGAGATACCCAGTCCAYGGGCCTGTGGATGGTAAAACCCAAGTCCTTTTACRAAAGAAGGAAAAGAGGGCCACGTCCTGGCCAGACCTCATTGCCAAGGTTTTCCRGATCGATGTGAAGGCYGATGTGGACTCGATTCATCCCACTGAGTTCTGCCATAACTGCTGGAGCTTCATGCATAGGAAGTTTAGCAGTGCCCCGTGTGAGGCTTACTCCCCAAGGAATGCAACCATGGAGTGGTCCTCCCACACAACATCCTGTGACATCTGCCACACTGCCCGTCAGGGACTCAAGAGGAAGGGTCATCAGCCAAGCGCGCAGCTCAGCAAAAAACTCAGAACTGTGATTGACCGAGCTCGAGAAGTCCGTCGGCGCAAGAGGAGAGCTCAGGCCAGGATCAGCAACAAGGAACTGATGAAGAAGATTGCCAACTGCAGTAAGATACATCTCAGTACCCAGCTCCTGGCAGTGGACTTCCCGGCRCACTTTGTGAAATCTATCTCCTGCCAGATTTGTGAACACATTCTGGYGGACCCTGTAGAGACCAGCTGTAAGCATGTATTTTGYAGGATCTGCATTCTCAGATGCCTCAAAGTCATGGGAAGCTATTGTCCTTCTTGCCGGTACCCCTGCTTCCCTACTGACCTGGAGAGTCCAGTGAAGTCTTTTCTGAGCATCTTGAATACCCTGATGGTGAAATGTCCAGCCAAAGAGTGCAATGAGGAGGTCAGCTTGGAAAAATATAATCACCATGTCTCAAGCCACAAGGAATCGAAAGAGACTTTCGTGCATATTAATAAAGGGGGCCGGCCCCGCCAGCATCTCCTGTCCCTGACCCGGAGGGCTCAGAARCACCGYCTGAGGGAGCTCAAGCTGCAAGTCAAGGCTTTYGCTGACAAAGAAGAAGGTGGAGATGTGAAGTCAGTGTGCCTGACCTTGTTCCTGCTGGCTCTGAGGGCAAGGAATGAGCACAGACAAGCCGACGAGCTGGAGGCCATCATGCAGGGACGGGGCTCCGGCCTGCAGCCGGCTGTTTGCTTGGCCATCCGTGTCAACACCTTCCTCAGCTGCAGCCAGTACCACAAGATGTACAGGACTGTGAAGGCCATCACGGGGAGGCAGATTTTCCAGCCTTTGCATGCCCTTCGGACTGCTGAGAAGGTCCTTCTGCCGGGCTACCACCCCTTTGAGTGGCAGCCACCTCTGAAGARCGTGTCTTCCAGCACTGACGTGGGCATTATTGATGGGTTGTCTGGACTGTCCTCCTCTGTGGACGATTACCCGGTGGACACCATTGCCAAGCGCTTCCGCTATGATTCAGCTTTGGTGTCTGCTCTGATGGACATGGAAGAAGACATCCTGGMGGGCATGAGAGACCAAGACTTTGAYGACTACCTGAATGGCCCCTTCACTGTAGTGGTGAAGGAGTCTTGTGATGGGATGGGAGACGTGGGCGAGAAGCACGGCAGTGGGCCAGCAGTTCCGGAAAAGGCAGTTCGGTTTTCCTTCACGATCATGAAAATCACCATCGCTCACGGGTCACAGAATGTGAAGGTGTTTGAGGAAGCCAAGCCTAACTCTGAACTGTGTTGCAAGCCCTTGTGCCTCATGCTGGCAGATGAGTCTGACCACGAGACCCTGACGGCCATCCTGAGCCCTCTCATTGCCGAGAGGGAGGCCATGAAGAGCAGCAAATTAATGCTTGAGATGGGAGGCATCCTCCGGACTTTCAAGTTCATCTTTAGGGGTACTGGGTATGATGAGAAACTTGTCCGGGAAGTGGAAGGCCTCGAGGCTTCGGGCTCAGTCTACATTTGTACCCTTTGTGATGCCACCCGCCTGGAAGCCTCTCAAAATCTTGTCTTCCACTCCATCACCAGAAGCCACGTAGATAATCTGGAGCGCTATGAGGTCTGGCGTTCCAACCCATACCACGAGACGGTGGAGGAACTGCGGGACCGGGTGAAGGGGGTCTCGGCCAAACCCTTCATTGAGACGGTCCCTTCCATAGATGCACTCCACTGCGACATCGGCAACGCAGCTGAGTTCTACAAGATTTTCCAGCTGGAGATAGGGGAGGTGTATAAGAACCCCAGTGCCTCCAAAGAGGAGAGGAAAAGATGGCAGGCTGCCTTGGACAAGCACCTCCGGAAGAAGATGAATCTGAAACCAATCATGAGGATGAATGGCAACTTTGCCAGGAAGCTCATGACCAAAGAGACGGTTGAAGCAGTTTGTGAATTAATTCCCTCCGAGGAGAGGCACGAAGCTCTGAGGGAACTAATGGACCTTTATTTGAAGATGAAACCCGTCTGGCGATCATCATGCCCTGCTAAGGAGTGTCCAGAATCCCTCTGCCAGTATAGTTTCAATTCACAGCGTTTTGCTGAGCTCCTCTCCACCAAGTTCAAGTATAGATACGAGGGCAAAATCACCAATTATTTTCACAAAACCCTGGCTCACGTCCCTGAAATTATTGAGAGGGATGGCTCCATTGGTGCCTGGGCAAGCGAGGGAAATGAGTCTGGCAACAAACTCTTCAGGCGCTTCCGGAAAATGAATGCCAGGCAGTCCAAGTACTACGAAATGGAAGATGTCTTGAAACATCACTGGTTGTATACCTCCAAATACCTGCAGAAGTTTATGAATGCTCATAATGCATTGAAAACTTCAGGGTTTACCATAAACTCACAGGGAAGCTTAGGGGACTCATTAGACCTAGAGGACTCTCCAGAACCTCAAGATTCAATGGAATTTTAA

Related Sequences

bmy_12112T0 Protein

Length: 1061 aa      View alignments
>bmy_12112T0
MLMREMYQAKEISTSASMAVSLPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFGKAPENAQAEKQDSSERKPSLEQSPAVLDKPGGQKPALTQPALKPHPKFLKKSHDDRKARDKAMHQANLRHLCRICGNPFKADGHNRRYPVHGPVDGKTQVLLXKKEKRATSWPDLIAKVFXIDVKADVDSIHPTEFCHNCWSFMHRKFSSAPCEAYSPRNATMEWSSHTTSCDICHTARQGLKRKGHQPSAQLSKKLRTVIDRAREVRRRKRRAQARISNKELMKKIANCSKIHLSTQLLAVDFPAHFVKSISCQICEHILXDPVETSCKHVFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSILNTLMVKCPAKECNEEVSLEKYNHHVSSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRTAEKVLLPGYHPFEWQPPLKXVSSSTDVGIIDGLSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILXGMRDQDFDDYLNGPFTVVVKESCDGMGDVGEKHGSGPAVPEKAVRFSFTIMKITIAHGSQNVKVFEEAKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSKLMLEMGGILRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDATRLEASQNLVFHSITRSHVDNLERYEVWRSNPYHETVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPSASKEERKRWQAALDKHLRKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKYYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTINSQGSLGDSLDLEDSPEPQDSMEF*