Part of scaffold_714 (Scaffold)

For more information consult the page for scaffold_714 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRAF6 ENSTTRG00000008727 (Bottlenosed dolphin)

Gene Details

TNF receptor-associated factor 6, E3 ubiquitin protein ligase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008274, Bottlenosed dolphin)

Protein Percentage 61.35%
cDNA percentage 61.68%
Ka/Ks Ratio 0.27523 (Ka = 0.0186, Ks = 0.0677)

TRAF6 ENSBTAG00000036009 (Cow)

Gene Details

TNF receptor-associated factor 6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021630, Cow)

Protein Percentage 93.1%
cDNA percentage 91.19%
Ka/Ks Ratio 0.13682 (Ka = 0.0388, Ks = 0.2838)

TRAF6  (Minke Whale)

Gene Details

TNF receptor-associated factor 6, E3 ubiquitin protein ligase

External Links

Gene match (Identifier: BACU008910, Minke Whale)

Protein Percentage 98.81%
cDNA percentage 98.89%
Ka/Ks Ratio 0.34586 (Ka = 0.008, Ks = 0.0231)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1320 bp    Location:107966..137127   Strand:+
>bmy_12113
ATGCTACTCAAAATCTTTTTGAGAAGAAGAAAAAGAGCAGTCGATAATCACGTTACTATGAGTCTGCTACACTGTGAAAACAGCTGTGGATCCAGCCAGTCTGAGAGCGGCTGCTGTGCTGCCATGGCCGCCAGCTCCTGTGGTGCTGCAGCAAAAGATGACAGTGTGAGTGGAACGGCCAGCACAGGGAATCTTTCCAGCTCTTTTATGGAAGAGATCCAGGGGTATGACGTGGAATTTGACCCACCCCTGGAAAGCAAGTATGAATGCCCCATCTGCTTGATGGCATTACGGGAAGCAGTGCAAACACCATGCGGCCACAGGTTCTGCAAAGCCTGCATCATCAAATCAATAAGGATCATCAAGCACATTATGCCTAATCATTATGATCTAGACTGTCCTACAGCCCCAGTTCCATGCACATTCAGTACTTTTGGTTGCCATGAAAAGATGCAGAGGAATCACTTGGCACGCCACCTGCAAGAGGATACCCAGTCGCACATGAGAATGATGGCCCAGGCTGTTCAGACTTTAAGCCTTGCGATAGCTCCCGCACCTCAGCGTGGCATGCTGCCATGTGATTCTACCTCTCTGCCCCGGGTTTCCTCTGGGTGTCACTCAGAGGTCCAGAATTTCCAAGAAACCATTCAACAGTTAGAGGGTCGCCTTGTAAGACAAGACCATCAAATCCGGGAGCTGACCGCAAAAATGGAAACTCAGAGCACGTATGTAAGTGAGCTAAAACGAACTATTCGAACCCTTGAGGACAAAGTTGCTGAAATAGAAGCACAGCAGTGCAATGGAATTTACATCTGGAAGATTGGCAACTTTGGGATGCACTTGAAATCTCAAGAAGAGGAGAAACCTGTTGTCATTCACAGCCCCGGATTCTACACAGGCAAACCTGGCTACAAACTATGCATGCGCCTGCACCTGCAGCTACCGACTGCGCAGCGCTGTGCCAACTACATATCCCTCTTTGTCCACACGATGCAAGGAGAGTATGACAGCCACCTCCCTTGGCCCTTCCAGGGTACGATACGCCTTACCATCCTTGATCAGTCTGAAGCACCTGTAAGGCAAAACCATGAAGAGATAATGGATGCCAAACCAGAGCTGCTTGCCTTCCAGAGACCCACCATCCCACGGAACCCCAAAGGGTTTGGCTATGTGACTTTTATGCATCTGGAAGCCCTAAGACAAAGAACCTTCATCAAGGACGACACGTTATTAGTACGCTGTGAGGTCTCCACCCGCTTCGACATGGGCAGTCTTCGGAGGGAGGGTTTTCAGCCACGAAGTACTGACTTGGGGATATAG

Related Sequences

bmy_12113T0 Protein

Length: 440 aa      View alignments
>bmy_12113T0
MLLKIFLRRRKRAVDNHVTMSLLHCENSCGSSQSESGCCAAMAASSCGAAAKDDSVSGTASTGNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRIIKHIMPNHYDLDCPTAPVPCTFSTFGCHEKMQRNHLARHLQEDTQSHMRMMAQAVQTLSLAIAPAPQRGMLPCDSTSLPRVSSGCHSEVQNFQETIQQLEGRLVRQDHQIRELTAKMETQSTYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRREGFQPRSTDLGI*