Sequence detailsbmy_12157 (Coding sequence)

Part of scaffold_713 (SequenceType object (1))

For more information consult the page for scaffold_713 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLCO1C1ENSTTRG00000006643 (Bottlenosed dolphin)

Gene Details

solute carrier organic anion transporter family, member 1C1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006290, Bottlenosed dolphin)

Protein Percentage 62.25%
cDNA percentage 66.67%
Ka/Ks Ratio 0.69453 (Ka = 0.2667, Ks = 0.384)

SLCO1C1ENSBTAG00000019602 (Cow)

Gene Details

solute carrier organic anion transporter family member 1C1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000026117, Cow)

Protein Percentage 63.52%
cDNA percentage 71.23%
Ka/Ks Ratio 0.66971 (Ka = 0.3398, Ks = 0.5073)

SLCO1C1 (Minke Whale)

Gene Details

solute carrier organic anion transporter family, member 1C1

External Links

Gene match (Identifier: BACU016336, Minke Whale)

Protein Percentage 63.69%
cDNA percentage 71.74%
Ka/Ks Ratio 0.70788 (Ka = 0.3367, Ks = 0.4757)

Additional orthologs identified in other species via the OPTIC pipeline.

SLCO1C1 (Human)   Slco1c1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1710 bp    Location:687775..721111   Strand:+
Raw sequence 
>bmy_12157
TGTCTAACTTATGAACATTTTATTCTTTTCCCCAAAGGAAATCTCTTAGTTATAACATTTGTTAGCTACTTTGGAGCCAAACTTCACAGGCCAAAAATAATCGGAGCAGGGTGCCTAATCATGGGCGTTGGAACATTGCTCATTGCAATGCCTCAGTTCTTCATGGAGCAGTACAGATATGAAAGGTATTCTCCCTTCTCCAATTCCACTTTCAGCATCTCTCCATGTTTCCTGGGGTCAAACAGTCCATTACCAATCTCAGTTATGGAAAAATCACAATCCAAAATAAATAATGGACAACTTGCAGACATGCAGAATAAATGTTTAACTTCGATAGTGATCGAATTTCAACCTCATTTGCTTTCTTTTCAAGAATGTGAAATTGATGCCAGCTCCTCCATGTGGGCTTATGTCTTCCTGGGGAACCTTCTTCGTGGCATTGGAGAAACTCCCATTCAGCCTCTAGGCATCGCCTACCTTGATGATTTTGCTAATGAGGACAATGCGGCTTTCTATATTGGGTGTGTGCAGACGGTTGCAATTATAGGACCAATCTTTGGCTTCCTGTTAGGCTCATTATGTGCCAAACTGTATGTTGACATTGGCTTTGTAAATCTAGATCATATAACCATCACCCCAAAGGATCCACAGTGGGTGGGTGCCTGGTGGCTTGGTTATCTAATAGCAGGAAGCATAAGTCTTCTGGCAGCTGTGCCTTTCTGGTATTTACCAAAGAGTCTACCAAGACCCCGGAGCAGAGAGGATTCCAATTCCTCCTCTGAGAAATCTAAGTTTATTATGGATGATCRCACGGACTACCAAACACCTCTTGGAGAAAAAGCAAAAATCATGGAAATGGCAAGAGATTTTCTGCCATCACTGAAGAGTCTTTTTGGAAATCCAGTGTACTTCTTATATTTGTGTGCAAGCACCGTTCAGTTCAATTCCTTATTTGGCATGGTGACTTATAAACCRAAGTACATTGAGCAACAGTATGGGCAGTCATCCTCTAAGGCCAACTTTGTTATCGGTATGCTTCTCTGTCCTTCCTGCTTTCCAATAGGCAATATCAGCTGTGTCTTGTTAATCCTTAGTAACTTTMGAGAAATTGTTCCAATATTTAGACTGAAGGTAATTTATGGCATTTCAAAAAAACCAAACCTGTCTCTTATCATGAACGAGCTCTCTTTTCAGATTGCAACTCAAGATGCAAATGTTCAGAGACAAAATGGGAACCCATGTGTGGTGCAAATGGAATTACATATGCATCGGCTTGTCTTGCTGGTTGTCAAACCTCAACCGGGAGTGGAAAGACTACTGTGCATTAAGCCACAACTTAAGTCTTTTGCCCTGGGTATCTACACCTTAGCAGTAAGAGTTCTTGAAGATGGCAAGCATTTGAATCTTGAGGAACATCTTCACGTTATTAAGAGCAATGTAAATTGGATAGTTGCAATAATTGAGATGGACATTCTCTCTTCTTCTAGACACATGTATCTGGGACTAACCATGATCCTTGGCACCATGTCCATTTTCCTAAGTATTGCAGTACTTTTCACTTTAAAGAAAAAGTATGTTTCAAAACACAGACGCTTCAGAACCAAGAGAGAAAGAACAATGGTGTCTACAAGAATCAGGAAGGAAAACTGTACGACGAGTGATCATTTGCTACAACCCAGCTATTGGCCAGGCAAAGAAACGCAGCTTTAG

Related Sequences

bmy_12157T0 SequenceType object (3)

Length: 570 aa      View alignments
>bmy_12157T0
CLTYEHFILFPKGNLLVITFVSYFGAKLHRPKIIGAGCLIMGVGTLLIAMPQFFMEQYRYERYSPFSNSTFSISPCFLGSNSPLPISVMEKSQSKINNGQLADMQNKCLTSIVIEFQPHLLSFQECEIDASSSMWAYVFLGNLLRGIGETPIQPLGIAYLDDFANEDNAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHITITPKDPQWVGAWWLGYLIAGSISLLAAVPFWYLPKSLPRPRSREDSNSSSEKSKFIMDDXTDYQTPLGEKAKIMEMARDFLPSLKSLFGNPVYFLYLCASTVQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGMLLCPSCFPIGNISCVLLILSNFREIVPIFRLKVIYGISKKPNLSLIMNELSFQIATQDANVQRQNGNPCVVQMELHMHRLVLLVVKPQPGVERLLCIKPQLKSFALGIYTLAVRVLEDGKHLNLEEHLHVIKSNVNWIVAIIEMDILSSSRHMYLGLTMILGTMSIFLSIAVLFTLKKKYVSKHRRFRTKRERTMVSTRIRKENCTTSDHLLQPSYWPGKETQL*