Part of scaffold_710 (Scaffold)

For more information consult the page for scaffold_710 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2C ENSTTRG00000010060 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009542, Bottlenosed dolphin)

Protein Percentage 91.7%
cDNA percentage 91.99%
Ka/Ks Ratio 0.28605 (Ka = 0.0601, Ks = 0.2101)

POLR2C ENSBTAG00000001856 (Cow)

Gene Details

DNA-directed RNA polymerase II subunit RPB3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002420, Cow)

Protein Percentage 88.36%
cDNA percentage 84.48%
Ka/Ks Ratio 0.13205 (Ka = 0.0905, Ks = 0.6851)

POLR2C  (Minke Whale)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa

External Links

Gene match (Identifier: BACU001834, Minke Whale)

Protein Percentage 94.51%
cDNA percentage 94.38%
Ka/Ks Ratio 0.15298 (Ka = 0.03, Ks = 0.1959)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 861 bp    Location:233791..224551   Strand:-
>bmy_12169
ATGCCGTATGCCAACCAGCCTACCGTGCGGATCACGGAGCTCACCGACGAGAATGTCAAGTTCATCATCGAGAATACGGACCTGGCAACTGGCCCCCGGGCCAGGGCTTTCGCTTTGGGAACCGTGGGTCGTGGGGCCGGCCTGTCGAGGCTGCGGTGCCCACACGCCGCTTGGTTTTCATTCCTCAGAGTGGCAAATTCTATCCGGAGGGTCTTCATCGCTGAGGTGCCCATAATAGGATTAATTCCCCTCACGAGTGACGACATTGTGGACAAGCTGCAGTACTCCCGGGACTGTACGTGTGAAGAGTTCTGCCCCGAGTGCTCGGTGGAGTTCACCCTCGACGTGCGGTGCAACGAAGACCAGACGCGTCATGTCACGTCTCGAGACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTGACGTCCCGGAACCGAGATAATGACCCCAATGACTACGTGGAGCAGGATGACATCCTCATCGTCAAGCTGAGAAAGGGCCAGGAGCTGAGACTTCGCGCCTACGCCAAAAAGGGCTTTGGCAAGGAACACGCCAAGTGGAACCCGACTGCAGGCGTGGCTTTTGAATACGATCCCGACAACGCCCTGAGGCACACGGTGTACCCCAAGCCGGAGGAGTGGCCAAAGAGTGAGTACTCGGAGCTGGACGAGGATGAGTCGCAGGCGCCCTACGACCCCAACGGCAAGCCGGAGAGGTTTTACTACAACGTGGAGTCCTGTGGCTCTCTGCGCCCTGAAACCATTGTCCTGTCAGCCCTGTCCGGATTAAAGAAGAAGCTGAGTGATTTACAGACCCAGTTAAGCCACGAGATCCAGAGTGACGTCCTGACCATAAACTAG

Related Sequences

bmy_12169T0 Protein

Length: 287 aa      View alignments
>bmy_12169T0
MPYANQPTVRITELTDENVKFIIENTDLATGPRARAFALGTVGRGAGLSRLRCPHAAWFSFLRVANSIRRVFIAEVPIIGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN*