Sequence detailsbmy_12172 (Coding sequence)

Part of scaffold_710 (SequenceType object (1))

For more information consult the page for scaffold_710 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCL17ENSTTRG00000010056 (Bottlenosed dolphin)

Gene Details

chemokine (C-C motif) ligand 17

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009537, Bottlenosed dolphin)

Protein Percentage 12.7%
cDNA percentage 25.4%
Ka/Ks Ratio 0.80226 (Ka = 2.349, Ks = 2.928)

CCL17ENSBTAG00000001191 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000001579, Cow)

Protein Percentage 66.67%
cDNA percentage 78.31%
Ka/Ks Ratio 0.59171 (Ka = 0.2459, Ks = 0.4156)

CCL17 (Minke Whale)

Gene Details

chemokine (C-C motif) ligand 17

External Links

Gene match (Identifier: BACU001837, Minke Whale)

Protein Percentage 98.41%
cDNA percentage 97.88%
Ka/Ks Ratio 0.09795 (Ka = 0.007, Ks = 0.0718)

Additional orthologs identified in other species via the OPTIC pipeline.

CCL17 (Human)   Ccl17 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 192 bp    Location:275951..274186   Strand:-
Raw sequence 
>bmy_12172
ATGACCTCCCTGAAGATGCTTCTCCTGGCCGCCCTCCTCCTGGGGGCTTCCCTGCAGGACACCCACGCAGCTCGAGGAGCCAATGTCGGCCGAGAGTGCTGCCTGCAGTACTTCAAAGGGGCCATTCCTCTCAGGAAGCTGGTGAGGTGGTACCGGACCCCAAGGGACTGTCCCAGGGATGCCATCGTGTGA

Related Sequences

bmy_12172T0 SequenceType object (3)

Length: 64 aa      View alignments
>bmy_12172T0
MTSLKMLLLAALLLGASLQDTHAARGANVGRECCLQYFKGAIPLRKLVRWYRTPRDCPRDAIV*