Sequence detailsbmy_12282 (Coding sequence)

Part of scaffold_719 (SequenceType object (1))

For more information consult the page for scaffold_719 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SBSNENSTTRG00000015130 (Bottlenosed dolphin)

Gene Details

suprabasin

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014346, Bottlenosed dolphin)

Protein Percentage 76.71%
cDNA percentage 83.53%
Ka/Ks Ratio 0.77266 (Ka = 0.1785, Ks = 0.231)

SBSNENSBTAG00000015915 (Cow)

Gene Details

Suprabasin

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000032173, Cow)

Protein Percentage 62.93%
cDNA percentage 70.67%
Ka/Ks Ratio 0.56599 (Ka = 0.3427, Ks = 0.6055)

SBSN (Minke Whale)

Gene Details

suprabasin

External Links

Gene match (Identifier: BACU000597, Minke Whale)

Protein Percentage 95.17%
cDNA percentage 97.91%
Ka/Ks Ratio 1.54914 (Ka = 0.0246, Ks = 0.0159)

Additional orthologs identified in other species via the OPTIC pipeline.

SBSN (Human)   Sbsn (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1128 bp    Location:623115..620354   Strand:-
Raw sequence 
>bmy_12282
ATGCATCTTGCCAGTTTGCTCAGCTCCTGCTCCCTCTTGCTGCTGTTGGGGCCCTTGCCTGGATGGGAGGCCAATGCTGAGCCCGTTAAGAAGGTCACTGAAGGGATCAGCCAAGGGCTGAGCAATGCAGAGAGAGAGGTGGGCAAGGCCTTGGAAGGCATCAATAATGGAATCCCTCAAGCTGGAAGGGAGAAAGTTTTTAATGGACTCAACAGTGTGGGGAGCCAGGCCGGTAAGGAGCTGGACAAGGGCATCCAGGGGCTCAACCACAGCCTGGACAAGGTAGCCCATGGAATCAACAATGTCACCGGACAAGCAGGAAAGGGAGCAGAGAAGTTTGTCCATGGGGTCAACAATGGTACTAGACAGGTTGGGAAGGAGGCAAACAAAGTGATTCAGGGAGTCCACCATGCCGGGAAAGAAGGAGTAAAAATAGTCCAAGGGGTCCATCATGGAGTTAATCAGTCTGGAAAGGAGGTGGAAAAGTTTGGCCAGGGGGTCCACCATGCTGCAGGGCAGGCTGGGAAAGATGGAGAAAAAATAGTCCAGGGGGTCCATCACGGAGTTAATCAGGCTGGAAAGGAGGTGGAAAAGTTTGGCCAGGGCACCCACCACGCTGCTGAACAGGCTGGAAAGGAGGCTGGCAAAGTGGTCCAAGGGGTCCACGATGGGGTCAACCAGGCCGGAAAGGAGGCAGAGAAATTTGGCCACGGGGTCAGCCACGCTGCTGGTCAGGCTGGAAAGGAAGTGGAGAAACTTGGCCAAGGTGTCCACCACGCTGCTGGCCAGGCYGGGAAGGAGGAGGACGGGTTGCAGCAGACTGTTCATACTGGGACCAACCAAGACGGCAAGGAAGCCAACAAGCTGCTGAATGCTTTGGTCAATAAGCCCTTCATTGGCCTTTCAGTTCTGTGGAAGGTGAGTGCCCACGTGGTTTCTACTTCCTACTTGGGAGATGCTCTTACATCCTCTTCCCGTTGCCTGTTCACTGACGACTGCACTGTGGACAGACACTCAGCCTCTGTGGACACCATCCAACCCATTTTCCAGCTCTGGTTTTCCTTTCCTCACTGCTCTTTGCCCTTCGCATCCTGCTTTCATCTTTTGGGCGCTTTCCGTTCCCACTGA

Related Sequences

bmy_12282T0 SequenceType object (3)

Length: 376 aa      View alignments
>bmy_12282T0
MHLASLLSSCSLLLLLGPLPGWEANAEPVKKVTEGISQGLSNAEREVGKALEGINNGIPQAGREKVFNGLNSVGSQAGKELDKGIQGLNHSLDKVAHGINNVTGQAGKGAEKFVHGVNNGTRQVGKEANKVIQGVHHAGKEGVKIVQGVHHGVNQSGKEVEKFGQGVHHAAGQAGKDGEKIVQGVHHGVNQAGKEVEKFGQGTHHAAEQAGKEAGKVVQGVHDGVNQAGKEAEKFGHGVSHAAGQAGKEVEKLGQGVHHAAGQAGKEEDGLQQTVHTGTNQDGKEANKLLNALVNKPFIGLSVLWKVSAHVVSTSYLGDALTSSSRCLFTDDCTVDRHSASVDTIQPIFQLWFSFPHCSLPFASCFHLLGAFRSH*