Part of scaffold_719 (Scaffold)

For more information consult the page for scaffold_719 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RBM42 ENSTTRG00000002217 (Bottlenosed dolphin)

Gene Details

RNA binding motif protein 42

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002073, Bottlenosed dolphin)

Protein Percentage 83.94%
cDNA percentage 83.59%
Ka/Ks Ratio 0.36494 (Ka = 0.0193, Ks = 0.0529)

BT.87291 ENSBTAG00000013440 (Cow)

Gene Details

RNA-binding protein 42

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017884, Cow)

Protein Percentage 98.88%
cDNA percentage 93.97%
Ka/Ks Ratio 0.02661 (Ka = 0.0056, Ks = 0.2098)

RBM42  (Minke Whale)

Gene Details

RNA binding motif protein 42

External Links

Gene match (Identifier: BACU000603, Minke Whale)

Protein Percentage 99.79%
cDNA percentage 99.43%
Ka/Ks Ratio 0.07135 (Ka = 0.0011, Ks = 0.015)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1443 bp    Location:762809..770504   Strand:+
>bmy_12288
ATGGCCGGGGCGGGGCCAGCCCCGGGACTCCCGGGTGCAGGAGGACCTGTGGTCCCGGGCCCTGGTGCTGGCATCCCGGGCAAGAGCGGCGAGGAACGCTTGAAGGAGATGGAGGCGGAGATGGCCCTGTTTGAGCAGGAAGTTCTGGGGGCTCCGGTTACAGGAATCCCAACTGCTGTGCCTGCGGTGCCCACCGTCCCCACGGTAGAAGCAATGCAAGTCCCAGCAGCTCCTGTGATCCGCCCAATTATCGCCACCAACACATACCAGCAGGTCCAACAGACTCTAGAGGCCCGAGCAGCCGCTGCAGCCACAGTGGTTCCTCCCATGGTGGGTGGCCCACCTTTTGTGGGCCCAGTTGGCTTTGGTCCTGGTGATCGGAGTCACCTGGACAGTCCAGAGGCTCGAGAAGCCATGTTCCTGCGGCGAGCAGCTGCGGCCCCCCAGAGGGCCCCTATTCTGCATCCAGCCTTCATCCCTCACGTGCTGCAGAGAGCAGGTGAGGGGGCCAGGGTCACCATCCTGCCACCAGGTGGTCCTCGTCCTATGGCTCTGCGTCCCCCTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGCCCCCCTGGACCACCTATGATGCTGCCACCGATGGCTCGGGCCCCAGGGCCCCCTCTGGGCTCCATGGCTGCTCTGAGGCCTCCTCTGGAAGAGCCAGCAGCACCCCGAGAGCTGGGCCTCGGCCTGGGGTTGGGCCTGAAAGAGAAGGAGGAGGCTGTGGTGGCGGCAGCGGCTGGGCTGGAGGAGGCTGGCGCAGCGGTGGCCGTGGGGGCAGGGGGCACCCCAGCTGGCCCTGCGGTCATTGGGCCCAGCCTGCCACTGGCCCTGGCCATGCCTCTGCCCGAGCCTGAGCCCCTGCCCCTGCCGCTGGAAGTTGTGCGAGGCCTACTGCCCCCGCTGCGCATTCCTGAGCTCCTGTCCCTGCGTCCGAGACCCCGGCCCCCTCGGCCTGAGCCACCCCCTGGCCTCATGGCTCTTGAGGTCCCAGAGCCTCTAGGTGAGGACAAGAAGAAAGGAAAGCCAGAGAAATTGAAACGCTGCATTCGCACAGCAGCTGGGAGCAGCTGGGAGGACCCCAGCCTGCTGGAGTGGGATGCAGATGACTTCCGAATCTTCTGTGGGGATCTGGGCAATGAGGTGAATGATGACATCTTGGCACGAGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGCGACAAGCGCACGGGCAAAACCAAGGGCTATGGCTTCGTCAGCTTTAAGGACCCCAGCGACTATGTGCGCGCCATGCGTGAGATGAATGGGAAGTATGTGGGCTCACGCCCCATCAAGCTGCGCAAGAGCATGTGGAAGGACCGGAACCTGGACGTGGTGCGCAAGAAGCAAAAGGAGAAGAAGAAATTGGGCCTGAGATAG

Related Sequences

bmy_12288T0 Protein

Length: 481 aa      View alignments
>bmy_12288T0
MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVTGIPTAVPAVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAAAPQRAPILHPAFIPHVLQRAGEGARVTILPPGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEAGAAVAVGAGGTPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR*