Sequence details bmy_12291 (Coding sequence)

Part of scaffold_719 (Scaffold)

For more information consult the page for scaffold_719 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

UPK1A ENSTTRG00000001383 (Bottlenosed dolphin)

Gene Details

uroplakin 1A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001300, Bottlenosed dolphin)

Protein Percentage 79.88%
cDNA percentage 84.35%
Ka/Ks Ratio 0.44069 (Ka = 0.1452, Ks = 0.3295)

UPK1A ENSBTAG00000020543 (Cow)

Gene Details

uroplakin-1a

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027372, Cow)

Protein Percentage 80.49%
cDNA percentage 82.93%
Ka/Ks Ratio 0.29618 (Ka = 0.1422, Ks = 0.4801)

UPK1A  (Minke Whale)

Gene Details

uroplakin 1A

External Links

Gene match (Identifier: BACU000605, Minke Whale)

Protein Percentage 80.0%
cDNA percentage 85.86%
Ka/Ks Ratio 0.44892 (Ka = 0.1311, Ks = 0.292)

Additional orthologs identified in other species via the OPTIC pipeline.

UPK1A (Human)   Upk1a (Mouse)  

Genome Location

Sequence Coding sequence

Length: 495 bp    Location:794339..799778   Strand:+
Raw sequence 
>bmy_12291
ATGGGGAAGGCCCTTCTCACGGAGACTCATGCAGCCGGGGCTGCTGCCCCTGTGCAGGCCTTGCTAACCGGCTGCCCTGTCCAGCTGTCAGGCCTGGCCCTGTTTGCTGAAACGGTATGGGTGACCGCCGACCAGTACCACGTGTACCCACTGATGGGCGTCTCGGGCAAGGATGACGTCTTCGCCGGTGCCTGGATCGCCATCTTCTGCGGCTTCTCCTTCTTCGTGGTGGCCAGTTTTGGTGTGGGCGCAGCGCTCTGCCGCCGCCGGTCCATGATCCTCACGAGTCCGCCTGACCCCTGCCTCTCTCTCCAGCAAGAGTGCTGTGGCACGTCAGGTCCCACGGACTGGGTGAACTTCACATCAGCCTTCCGGGCCACCACCCCAGAGGTGGTGTTCCCCTGGCCCCCGCTGTGCTGTCGACGGACTGGCAACTTCATCCCCCTCAGTGAAGAAGGCTGCCGCCTGGGCCACTTGGACTACCTGTTCACCAAG

Related Sequences

bmy_12291T0 Protein

Length: 165 aa      View alignments
>bmy_12291T0
MGKALLTETHAAGAAAPVQALLTGCPVQLSGLALFAETVWVTADQYHVYPLMGVSGKDDVFAGAWIAIFCGFSFFVVASFGVGAALCRRRSMILTSPPDPCLSLQQECCGTSGPTDWVNFTSAFRATTPEVVFPWPPLCCRRTGNFIPLSEEGCRLGHLDYLFTK