Sequence detailsbmy_12295 (Coding sequence)

Part of scaffold_719 (SequenceType object (1))

For more information consult the page for scaffold_719 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000003828 (Bottlenosed dolphin)

Gene Details

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003580, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.67%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.013)

PSENENENSBTAG00000018593 (Cow)

Gene Details

Gamma-secretase subunit PEN-2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000024745, Cow)

Protein Percentage 96.04%
cDNA percentage 96.7%
Ka/Ks Ratio 0.15736 (Ka = 0.0171, Ks = 0.1089)

PSENEN (Minke Whale)

Gene Details

presenilin enhancer gamma secretase subunit

External Links

Gene match (Identifier: BACU018797, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.34%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0265)

Additional orthologs identified in other species via the OPTIC pipeline.

PSENEN (Human)   Psenen (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 486 bp    Location:854079..856109   Strand:+
Raw sequence 
>bmy_12295
ATGCGTGCGGCGTTGCCTGACCAAAAAGACTACAAGGTCCAGAGATACTTGCGGCATCTCGCGCAAAAGTCCGTAGTTGAAAGTGGCAAAGGGGTCCAAACAGGAGGAAGTAAGACTCCACTGGGTCAGGGCTTGGGTCTTGCCCTGAAGACCCTCGGAAGACCCGGCCCCAGCGCAACTATGAACTTGGAGCGGGTGTCCAACGAGGAGAAGTTGAACCTGTGCCGGAAGTACTACCTGGGTGGGTTTGCTTTCCTGCCTTTTCTCTGGTTGGTCAACATCTTCTGGTTCTTCCGAGAGGCCTTCCTTGTCCCGGCATACACGGAACAGAGCCAAATCAAAGGCTATGTCTGGCGCTCAGCTGTGGGCTTCCTCTTCTGGGTGATTGTACTCACCACTTGGATCACTATCTTCCAGATCTACCGGCCACGTTGGGGCGCCCTTGGGGACTACCTCTCCTTCACCATACCCCTGGGTACCCCCTGA

Related Sequences

bmy_12295T0 SequenceType object (3)

Length: 162 aa      View alignments
>bmy_12295T0
MRAALPDQKDYKVQRYLRHLAQKSVVESGKGVQTGGSKTPLGQGLGLALKTLGRPGPSATMNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRSAVGFLFWVIVLTTWITIFQIYRPRWGALGDYLSFTIPLGTP*