Sequence detailsbmy_12307 (Coding sequence)

Part of scaffold_765 (SequenceType object (1))

For more information consult the page for scaffold_765 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCF11ENSTTRG00000001132 (Bottlenosed dolphin)

Gene Details

PCF11 cleavage and polyadenylation factor subunit

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001061, Bottlenosed dolphin)

Protein Percentage 98.59%
cDNA percentage 98.77%
Ka/Ks Ratio 0.18762 (Ka = 0.0062, Ks = 0.0332)

PCF11ENSBTAG00000015277 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020320, Cow)

Protein Percentage 94.27%
cDNA percentage 93.86%
Ka/Ks Ratio 0.20397 (Ka = 0.0359, Ks = 0.1761)

PCF11 (Minke Whale)

Gene Details

PCF11 cleavage and polyadenylation factor subunit

External Links

Gene match (Identifier: BACU002292, Minke Whale)

Protein Percentage 95.43%
cDNA percentage 96.11%
Ka/Ks Ratio 0.37084 (Ka = 0.026, Ks = 0.0701)

Additional orthologs identified in other species via the OPTIC pipeline.

PCF11 (Human)   Pcf11 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 5061 bp    Location:296234..322315   Strand:+
Raw sequence 
>bmy_12307
ATGTCAGAGCAGACGCCGGCCGAGGCCGGTACTGCGGGGGCCCGGGAGGACGCCTGTCGGGATTATCAGTCATCACTCGAAGACCTGACCTTCAATAGCAAACCGCACATCAATATGCTGACCATTCTAGCCGAGGAGAACCTGCCCTTCGCCAAGGAGATCGTCTCTCTCATCGAGGCCCAAACCGCCAAGGCTCCCTCCTCAGAGAAGCTTCCTGTTATGTACCTTATGGATTCTATCGTGAAAAATGTTGGAAGAGAGTATCTCACTGCCTTTACTAAAAATCTAGTTGCAACATTTATTTGTGTGTTTGAAAAGGTGGATGAAAATACTAGAAAAAGTTTATTTAAATTACGTTCCACCTGGGATGAAATATTCCCTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCGTTAGATCCTGCTTGGCCTATTAAACCTCTGCCCCCCAATGTGAATACATCTAGCATCCATGTGAATCCTAAATTTTTAAATAAATCGCCTGAAGAGTCTTCAACACCTGGCACAGTGGTCAGTTCCCCTAGCATCTCCACTCCTCCAATTGTTCCGGATATACAAAAGAATCTTACCCAAGAGCAACTAATAAGGCAGCAGTTACTGGCAAAACAAAAGCAGTTGTTAGAACTTCAGCAGAAAAAGCTGGAGCTTGAGCTAGAGCAAGCTAAGGCACAACTGGCAGTTTCTCTTAGTGTTCAGCAGGAGACATCCAACTTAGGTCCTGGAACCGCACCATCCAAATTACATGTTTCACAAATTCCCCCTATGGCAGTTAAAGCTCCCCATCAGGTTCCTGTGCAACCTGAGAAAAGTCGTCCAGGTCCATCCTTACAAATTCAAGATATGAAAGGAACTAACCGGGATCCCCGTCTTAATAGGTTGAGCCAACATTCTTCTCATGGAAAAGATCAGAGTCACAGGAAGGAATTCCTAATGAACACATTGAACCAGTCTGATATTAAGACAAGTAAAACTGTACCCTCTGAAAAACTAAATTCATCCAAGCAAGAAAAAAGTAAATCAGGTGAAAAAATAACCAAGAAAGAACTTGACCAATTAGATTCTAAATCCAAATCTAAATCTAAATCACCATCACCTTTGAAAAACAAATTATCCCACACGAAAGACTTGAAAAGTCAAGAATCTGAAAGTGCAAGGGTGTCTGATATGAGCAAGAGAGATCCAAGATTAAAAAAACATCTTCAGGATAAGACTGATAGCAAAGATGATGATCTAAAAGAGAAGAGAAAAACTGCAGAAAAAAAGGATAAAGATGAACACATGAAATCATCTGAACACAGACTGGTGGGAAGTAGAAATAAAGTCATAAATGGCATTGTACAAAAACAGGATACAGTAACGGAAGAATCGGAAAAACAGGGGACAAAACCAGGGAGATCGAGTACTAGAAAGCGATCAAGATCACGATCACCCAAGTCTCGATCACCGATTATACATTCTCCCAAGAGAAGAGATAGGCGGTCACCCAAACGAAGGCAAAGGAGTATGTCTCCAACCTCAACACCCAAAGCTGGGAAGATTCGCCAGTCAGGAGTTAAGCAGTCACATATGGAAGAGTTTACACCACCTTCCAGGGAAGAAAGAAATGCGAAGAGAAGTACTAAACAGGATGTTCGAGATCCAAGGCGAATAAAAAAGACTGAAGAGGAACGACCACAAGAAACTGCAAATCAGCATTCTACCAAGTCAGGCACTGAACCAAAGGAAAATGTAGAAAATTGGCAAAGTTCCAAGTCTACCAAAAGATGGAAATCTGGTTGGGAAGAAAATAAAAGTTTACAACAGGGTGATGAACATAGTAAAGCTCCTCATCTAAGGCATAGGGAGAGCTGGTCAAGCACTAAAGGAATCTTGTCACCTCGAGCTCCAAAACAGCAGCATCGATTAAGCGTAGATGCCAATCTTCAGATTCCTAAAGAGTTAACTCTTGCAAGCAAAAGAGAATTACTTCAAAAGACGAGTGAACGTTTAGCATCTGGTGAAATTACACAGGATGAGTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAGTATCAAGAAGGTAAACATAGATGCAATGTACGGGATAGTCCTACAGAAGAAAATAAAGGTGGATTAAAAAAGAAACCTCTCTTAACTGATGCTGAATTAACCTACTATGAACATAAAGCAAAACTGAAAAGGACACAGGTTCAGCATTCATTTCCAAGACTTGATCTCTTAGATCCTGATATTTTTGACTACCCTTTGACTGATGCCTTGTTGTCTGGAATAGAATGTGAGCCATCCAAAAGTAAACATGCAAGTAGGAATAGTGGAGCACAGTTTGACAGAAAAGAACAATTTAGTGAAAGAGCAAGACGTCTTTCTCCTATATCTGGGAGTCGTACTTATGCTGAGAATCTTTCACCCCATGAGGGCCGGAGAAGACATGACGAGCAAGTCTCTGCTAAAGGTGTACGAGAAGAGCAGAGATCACCATTCAATGATCGTTTTCCACTTAAGCGACCTAGATATGAAGATTCAGATAAACCATTTGTAGATAGCCCAGCATCACGATTCGCCGGCCTTGATACAAATCAGCGACTTACGGCTTTAGCTGAAGATAGACCATTATACGATGGACCTAGTAGGCCATCAGTAGCGAGAGATGGCCCAACCAAGATGATTTTTGAAGGACCTAATAAATTAAGCCCTAGAATTGATGGACCTCCTGCACCAGGTTCTCTTCGGTTTGATGGGTCACCGGCACAAATGGGGGGAGGTGGCCCTTTGAGATTTGAAGGACCACAAGGCCAGTTAGGAGGTGGGTGTCCTTTGAGATTTGAAGGTCCTCCGGGACCAGTAGGGACACCTCTGCGGTTTGAGGGGCCTATTGGTCAAGCAGGAGGAGGTGGTTTTCGGTTTGAAGGTTCCCCCGGTCTGAGGTTTGAGGGATCTGCAGGTGGTTTGCGATTTGAAGGACCAGGGGCCCAGCCTGTGGGTAGTCTCAGGTTTGAGGGACACCGGGGTCAACCTGTGGGTGGTCTGAGGTTTGAGGGACCTCATGGTCAGCCTGTGGGTGGACTTAGATTTGATAATCCCCGAGGTCAGCCTGTAGGTGGACTTAGATTTGAGGGAGGTCATGGTCCATCAGGGGCTGCAATTAGGTTTGATGGACCTCATGGTCAGCCATCAGGTGGGATCAGATTTGAGGGCCCATTGCTACAGCAGGGAGTTGGGATGAGGTTTGAGGGCCCCCATGGTCAGTCAGTAGCTGGTATGAGATTTGAAGGACAACATAATCAACTTGGTGGGAACCTTAGGTTTGAGGGTCCACATGGTCAGCCAGGGGTTGGGATCAGGTTTGAAGGACCTTTAGTCCAACAAGGAGGTGGAATGAGGTTTGAGGGTCCTTCTGTACCAGGAGGCGGCCTGAGAATCGAAGGACCTCTGGGTCAAGGTGGTCCAAGATTTGAAGGTTGTCATGCTTTAAGGTTTGATGGGCAGCCAGGTCAGCCATCACTCTTGCCAAGATTTGATGGATTACATGGTCAGCCAGGTCCTAGATTTGAAAGAACTGGTCAGCCAGGCCCACAGAGATTTGATGGACCACCTGGACAGCAGGTTCAACCAAGATTTGATGGTGTACCTCAAAGATTTGATGGTCCACAACACCAGCAAGCATCAAGGTTTGATATTCCTCTTGGTCTTCAAGGCACACGATTTGACAATCATCCTTCACAAAGGCTTGAATCCGTATCTTTCAATCAGACTGGCCCATATAATGATCCACCTGGCAATGCTTTTAATGCCCCATCCCAAGGACTGCAGTTCCAAAGACATGAACAAATATTTGATTCACCTCAAGGACCAAATTTTAATGGACCACATGGCCCTGGAAACCAGAGTTTCTCGAATCCCCTTAACAGAGCTTCTGGACACTATTTTGATGAGAAGAATCTTCAGAGCTCTCAATTTGGAAACTTTGGCAATTTACCTGCTTCAATAACAGTAGGAAATATTCAGGCATCTCAACAGGTTCTGACTGGTGTTACTCAGCCAGTAGCATTTGGCCAAGGACAACAATTTTTGCCAGTTCATCCACAAAATCCTGGAGCATTTGTTCAGAATCCTTCAGGTGCCCTTCCTAAGGCATATCCTGATAATCATCTCAGTCAGGTGGATGTAAATGAATTGTTTTCAAAACTGCTAAAAACAGGAATTCTCAAATTGTCCCAGCCTGATTCAGCTACAGCACAAGTAAATGAAGTTGCTGCTCAGCCCCCTGCTGAGGAGGAAGAAGATCAAAGTGAAGATCAAGACGTTCCAGATCTTACCAATTTTACAGTTGAAGAATTGAAACAACGTTATGATAGTGTTATAAATCGACTGTATACTGGTATTCAGTGTTACTCTTGTGGAATGAGGTTTACAACATCACAGACAGATGTATATGCAGATCACTTGGACTGGCATTATCGACAAAATAGAACTGAAAAAGATGTAAGCAGAAAAGTCACTCATAGACGTTGGTACTACAGTTTAACAGACTGGATAGAATTTGAGGAAATAGCTGATCTGGAAGAACGTGCAAAGAGCCAGTTTTTTGAAAAGGTGCACGAAGAAGTCGTGCTCAAAACTCAGGAGGCTGCTAAAGAAAAGGAATTCCAAAGTGTACCTGCTGGACCAGCAGGAGCAGTTGAGAGTTGTGAAATTTGTCAAGAACAATTTGAACAGTACTGGGATGAAGAAGAGGAGGAGTGGCATTTAAAAAATGCTATTCGAGTAGATGGAAAGATTTATCATCCATCATGTTATGAAGATTATCAAAATACATCTTCATTTGATTGTACACCATCTCCCAGCAAGACACCAGTTGAAAATCCCTTGAACATTATGTTGAACATTGTCAAAAACGAATTGCAGGAACCCTGTGAAAGTCCCAAAGTTAAGGAAGAACGGATTGATACTCCACCAGCTTGTACAGAGGAAAGCATAGCAACAGCCACTGAAATTAAAACAGAAAATGACACAGTCGAGTCAGTTTAA

Related Sequences

bmy_12307T0 SequenceType object (3)

Length: 1687 aa      View alignments
>bmy_12307T0
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQQETSNLGPGTAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIQDMKGTNRDPRLNRLSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKSQESESARVSDMSKRDPRLKKHLQDKTDSKDDDLKEKRKTAEKKDKDEHMKSSEHRLVGSRNKVINGIVQKQDTVTEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSREERNAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTEPKENVENWQSSKSTKRWKSGWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLLTDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPAPGSLRFDGSPAQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGAQPVGSLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPHGQSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNLPASITVGNIQASQQVLTGVTQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEVAAQPPAEEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATATEIKTENDTVESV*