Part of scaffold_725 (Scaffold)

For more information consult the page for scaffold_725 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDHB1 ENSBTAG00000037885 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000049713, Cow)

Protein Percentage 94.13%
cDNA percentage 94.3%
Ka/Ks Ratio 0.22359 (Ka = 0.0298, Ks = 0.1331)

PCDHB1  (Minke Whale)

Gene Details

protocadherin beta 1

External Links

Gene match (Identifier: BACU015960, Minke Whale)

Protein Percentage 97.56%
cDNA percentage 98.76%
Ka/Ks Ratio 0.82115 (Ka = 0.0111, Ks = 0.0135)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2457 bp    Location:123528..125984   Strand:+
>bmy_12371
ATGGCGATTGCACGCAGAAAACTCTTGCAAAGCAGGCAAGTGGGCTCGCTTCTCCTTTTTCTGTGCTTATCTGTGGTGGGTGCGGCGGCCATCCGCTATTCGGTGGCAGAGGAGATGGAGAGTGGTTCGTTTGTAGCTAACGTGGCTAAGGACTTGGGGCTGGAGGTAGGGAAGCTGGCTGCGCGCAGGGCGCGGCTCGTTTCCGAGGGCAATATACTGCATTTCCGGCTGCACCGCAAGACAGGAGATCTGTTCGTGAAGGAGAAACTGGATCGGGAGTCACTTTGTGGCAAAGCCGATCCATGCGTTCTGGAGTTTGAAATAGTCCTGGTGGAGCCACTGCAGTCCTTTCGCGTGGAGGTCAGGGTATTTGATATCAATGACAATGCCCCGGTTTTCCTAAACAAGGAGCCTCTTTTAAAGATTCCGGAGAGCACCCCCCTGGGTTCACGGTTTCCTCTGCAGAGCGCGCAGGATCTGGACGTCGGCCTCAACGGTCTCCAAAACTACACCTTGAGCGCCAGTGCGTATTTCCACCTGCACACCCGCTTCCGCAGCCATGGGCCCAAGTATGCCGAGCTAGTGCTGGATAAACCCCTGGACAGAGAGGAGCAGCCTGAAGTCAACCTGACAATTACAGCTGTGGACGGAGGGTCTCCGCCCAAGTCCGGCACTGCCCACATCCGCGTGGAGGTTCTGGATGTCAATGATCACGTGCCCCAATTCTCTCGACTGGTGTACCGCGCTCAGGTACCGGAAAACAGTGCCAATGGTTCTTTGGTGACTACGGTGACTGCCACCGACCTAGACGAGGGCTCCAACAAGGAGATAACTTACTCTTTAGCTCAAAACCCAGAAGTAATTCTCCAGACGTTTCAGATTGACTCTGAAACTGGAGAGGTTCGACTAAGAGGGTCCCTAGATTTTGAAGCGATTGAAACATATGACATTGACATTCAAGCTACTGACGGAGGAGGACTCTCTGCCCACAGCAAAGTCCTGGTGGAGGTRGTGGATGTTAATGACAATCCTCCTGAAGTTACAGTCTCCTCTGTGTCCAGCCCTCTCCCTGAGGACTCTCCACTACAGACGGTAGTGGCCCTTTTCTCTATCAGAGACCGGGACATTCGAGTGGGAGGAAAAATCACTTGCTTCCTCAAAGAAGACCTTCCCTTTGCAGTCAAACCTACATTCAGGAATTCCTACTCACTGGTCACTGACAGAGGCATGGATCGGGAGGCGGTCTCTGGCTATAATATCACCCTTGTTGCCATGGATACTGGACCACCCACTCTGTCCTCGGAGACTGTGATAGAGGTGCTAATATCTGACATTAATGACAATCCCCCAGTATTTCAGGAAGATTCCTACATCTTGACTGTTCGAGAAAACAACAGCCCTGCAGTTTTTATTGGCAAAGTCCATGCTGAGGATCTAGATTTGGGTGAGAATGCCCAAATAACATATTCTCTGCTGCCTCCAAAAAGTGGAGATCTATCAGTCTTTGCTTMCATCTCCATAAATTCAGACAATGGGAAACTCTATGCACTGAGAACTATGGATTATGAAGCCATTCAAGATTTTCAGTTTGTGGTAAAGGCAACTGATGGGGGCTTCCTGTCACTGAGTAGCCAGGTTACTGTCAGAGTGGTTGTCCTGGATGACAATGATAACTGCCCAATGATCTTGTACCCACTGCAAAATGGCACCTTGCCCTGCAATGACCTGGTGCCTAGGTCTGCAGAGGCAGGCTACCTGGTGACTAAGGTGGTGGCTGTGGATGGTGACTCAGGTCAGAATTCCTGGCTTTCATATCATCTATTTAAGGCCACTGACCCTGGGTTATTCTCTGTTCAACAAAAAAATGGGGAAATCCGTACATTGCGGCAGATATCTGAGAGAGACCCCAGGATGCAGAAACTGATCGTTCTTGTTCAGGATTACGGCCAACCAGCTCTTTCTACTACTGCCTCACTTAATATCCTCCTGGTAGATGGCTTTTCTGAGCCCTATCTGCAGTTCCGGGATCCATTCAAGCATCCTACAAGGGTAAATCCATCCACTAAATATTTGGTCATTTCTCTGGCTGTGCTTTCCTTTCTCTTTCTCCTCTCTGTCACAGTGATCTTCATTACACATATCTGCCAGAAGATTAAATACAGAGAAAAGTTCACAATTCAAGAGCATTTCTATGATGACTGTAATTTCTCTAACAACCTGGTACAAGGAGGAGCCAGTGGATCCATATCCCAGCCTTGTCCCTATGAAGTGTCCTCAGCCACTGGCACTGGCAATTGTGAATTCTGGTTTCTTAAGCGCCTTATGCCCAACTTCCCCTTCCCCCATGGCACTGGAGAGGTAAAAACAGAGGCTGGCTCCAGTTTACCACCAGATTCTGATAGAAATAGGTCTCGGGGGTCAGAGGGCCATGCCCAAGTATCTGATGACCATATGTAG

Related Sequences

bmy_12371T0 Protein

Length: 819 aa      View alignments
>bmy_12371T0
MAIARRKLLQSRQVGSLLLFLCLSVVGAAAIRYSVAEEMESGSFVANVAKDLGLEVGKLAARRARLVSEGNILHFRLHRKTGDLFVKEKLDRESLCGKADPCVLEFEIVLVEPLQSFRVEVRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSASAYFHLHTRFRSHGPKYAELVLDKPLDREEQPEVNLTITAVDGGSPPKSGTAHIRVEVLDVNDHVPQFSRLVYRAQVPENSANGSLVTTVTATDLDEGSNKEITYSLAQNPEVILQTFQIDSETGEVRLRGSLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTVSSVSSPLPEDSPLQTVVALFSIRDRDIRVGGKITCFLKEDLPFAVKPTFRNSYSLVTDRGMDREAVSGYNITLVAMDTGPPTLSSETVIEVLISDINDNPPVFQEDSYILTVRENNSPAVFIGKVHAEDLDLGENAQITYSLLPPKSGDLSVFAXISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVRVVVLDDNDNCPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLFKATDPGLFSVQQKNGEIRTLRQISERDPRMQKLIVLVQDYGQPALSTTASLNILLVDGFSEPYLQFRDPFKHPTRVNPSTKYLVISLAVLSFLFLLSVTVIFITHICQKIKYREKFTIQEHFYDDCNFSNNLVQGGASGSISQPCPYEVSSATGTGNCEFWFLKRLMPNFPFPHGTGEVKTEAGSSLPPDSDRNRSRGSEGHAQVSDDHM*