Sequence detailsbmy_12374 (Coding sequence)

Part of scaffold_725 (SequenceType object (1))

For more information consult the page for scaffold_725 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDHB5ENSTTRG00000002341 (Bottlenosed dolphin)

Gene Details

protocadherin beta 5

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000002193, Bottlenosed dolphin)

Protein Percentage 80.13%
cDNA percentage 80.88%
Ka/Ks Ratio 0.31218 (Ka = 0.0125, Ks = 0.04)

PCDHB7ENSBTAG00000039433 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000009669, Cow)

Protein Percentage 77.14%
cDNA percentage 81.45%
Ka/Ks Ratio 0.24549 (Ka = 0.1372, Ks = 0.5591)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDHB5 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 2391 bp    Location:198127..200517   Strand:+
Raw sequence 
>bmy_12374
ATGGAGACTGCACCAGCAAAAACGCTACAGAAAAGGCAAGTTATCTTTCTTGCTATATTGTTGCTTTTGTGGGAGGCTGGCTCTGAAGCAGTTAGGTATTCCATGCCAGAAGAAACAGAAAGTGGGTCTTTTGTGGCCACCCTGGCAAAAGACCTGGGGCTCAGGGTGGGGGAACTGGCCACTCGGGGCGCGCGAATCCATTACAAAGGAAATAAACAGCTCTTGCAGCTGGATGTAACGACCGGGAATTTGCTTCTATGTGAAAAACTAGACCGGGAGGTGCTGTGTGGGGCGACCGATCCCTGCATACTGCATTTCCAACTATTACTGGAAAACCCGGTGCAGTTTTTTCAAGCTGATCTGCAGCTCACAGATATAAATGACCATTCCCCAGAGTTCCTCGAGAGGGAAATGCTCCTAAAAATCCCAGAAAACGTCCAGACAGGGACTGTGTTTCCTTTGAAAATAGCTCAGGACTTTGACATAGGTAGCAACACTATTCAGAATTACACAATCAGCCCCAACTCCCATTTTCATGTTGTCACTCATAATCGCGGAGATGGCAGAAAATACCCAGAGCTGGTGCTGGACAAACCGCTGGATCGGGAGGAAGGGCCTGAGCTCAGTTTAACCCTAACGGCGCTGGATAGTGGGGCTCCGCCCAGGTCCGGGACCACTGCAGTCCGCATTGAAGTCGTGGACATCAATGACAACGCCCCTGAGTTTTTACAGTCGGTCTATGAGGTACAGATTCCGGAGAACAGCCCCCTAAACTCCTTAGTTGTCGCTGTCTCCGCCCGAGATTTAGATGCAGGAACGAATGGGAATGTAGCCTACGCTCTATTCCAAGGTGATGAAGTTACTCAACTATTTGTAATAGACGAAATAACAGGAGAAATTCGTCTGAAAAGGGCATTGGATTTCGAGTCAACTCGATATTATAACGTGGAGATTGCAGCCACAGACGGCGGGGGCCTTTCAGGAAAATGCACTGTAGTTATAGAGGTGGTGGATGTGAACGACAACGTCCCTGAACTGACCATGTCGACGCTCACCAGCTCTACCCCAGAAAACTCCCCAGAGACTGTGGTGGCCGTTTTCAGTGTTTCTGATCCAGATACCGGGGACAACGGTAGGATGGTTTGCTCCATCCAGAATGATCTCCCCTTTCTCTTGAAACCCACATTCAAAAACTTTTACACCCTAGTGACCGAGAGGCCATTGGACAGAGAGAGCAGAGCGGAATACAACGTCACCATCACCGTCACAGATATGGGGACACCGAGACTGAAAACCCAGCACAACATAACCGTGCTGGTGTCCGACGTCAACGACAACGCCCCCGCCTTCACCCAGACCTCCTACACCCTGTCCGTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGTCCGCGCCACAGACAGAGACGCGGGCGCCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCTCGACGCGCACGTGCCCCTGGCCTCCCTGGTGTCCATCAACCCGGACAACGGCCACCTGTTCGCCCTGAGGTCCCTGGACTACGAGGCCCTGCGGGCGTTCGAGTTCCGCGTGGGCGCCGCCGACCGCGGCTCGCCCGCGCTCAGCAGCCAGGCGCTGGTGCGCGTGCTCGTGGCGGACGACAACGACAACGCGCCCTTCGTGCTGTACCCGCTGCAGAACGCCTCGGCGCCCTGCACCGAGCTGGTGCCCAGGGCGGCCGAGGCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTCTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAACGGCGAGGTGCGCACGGCCCGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAACGGCGAGCCGCCGCTGTCGGCCAGCGTCACGCTGCACGTGCTGCTGGTGGACGGCTTCTCGCAGCCCTACCTGCCGGCCCCGGAAGCGGAAGCGGCGGACGCGGCGCCGGCCGCCCCTCTCACCGTCTACCTGGTGGTCTCCTTGGCGTCGGTGTCGTCGCTCTTCCTCTTCTCGGTGCTGGTGTTCGTCGCGGTGCGGCTGTGCAGGMGGRGCGGGGCGGCCTCGGTGGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCGGGCCACCTGGTGGACGTCAGCGGCACGGGGACCCTGTCCCAGAGCTACCAGTACGAGGTGTGTCTGACGGGAGGCTCCGGGTTAAATGAGTTTAAATTCTTGAAGCCGATTCTCCCCAACCTCCCACCCCAGGGCGCTGGTGAAGAAATAGAGGAAAACGCCAACTTCCGGAATAGCTTTGGATTCAGTTAG

Related Sequences

bmy_12374T0 SequenceType object (3)

Length: 797 aa      View alignments
>bmy_12374T0
METAPAKTLQKRQVIFLAILLLLWEAGSEAVRYSMPEETESGSFVATLAKDLGLRVGELATRGARIHYKGNKQLLQLDVTTGNLLLCEKLDREVLCGATDPCILHFQLLLENPVQFFQADLQLTDINDHSPEFLEREMLLKIPENVQTGTVFPLKIAQDFDIGSNTIQNYTISPNSHFHVVTHNRGDGRKYPELVLDKPLDREEGPELSLTLTALDSGAPPRSGTTAVRIEVVDINDNAPEFLQSVYEVQIPENSPLNSLVVAVSARDLDAGTNGNVAYALFQGDEVTQLFVIDEITGEIRLKRALDFESTRYYNVEIAATDGGGLSGKCTVVIEVVDVNDNVPELTMSTLTSSTPENSPETVVAVFSVSDPDTGDNGRMVCSIQNDLPFLLKPTFKNFYTLVTERPLDRESRAEYNVTITVTDMGTPRLKTQHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDAGANAQVTYSLLPPLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPALSSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPLSASVTLHVLLVDGFSQPYLPAPEAEAADAAPAAPLTVYLVVSLASVSSLFLFSVLVFVAVRLCRRXGAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGLNEFKFLKPILPNLPPQGAGEEIEENANFRNSFGFS*