Sequence detailsbmy_12375 (Coding sequence)

Part of scaffold_725 (SequenceType object (1))

For more information consult the page for scaffold_725 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDHB6ENSBTAG00000047478 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000055671, Cow)

Protein Percentage 88.2%
cDNA percentage 90.7%
Ka/Ks Ratio 0.33698 (Ka = 0.0668, Ks = 0.1984)

PCDHB6 (Minke Whale)

Gene Details

protocadherin beta 6

External Links

Gene match (Identifier: BACU015963, Minke Whale)

Protein Percentage 96.12%
cDNA percentage 97.82%
Ka/Ks Ratio 0.80719 (Ka = 0.0211, Ks = 0.0262)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDHB6 (Human)   Pcdhb13 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1407 bp    Location:211913..215689   Strand:+
Raw sequence 
>bmy_12375
ATGGAGATGGTGCAAACAAAAGTACATCATAAGAAAAGGCAAGTGGTGATCTTCATTATATTGATTCTTTTGTGGGAGGCAGGTTCAGAATCGATTCAGTATTCTATACTGGAGGAGACAGAAAGTGGCACATTTGTGGCCAACCTGACAAAGGACCTGGGACTCAGGATGGGAGAGCTGGCTGCCCGGGCCGCCCGAGTTGTTTTTAAGGGGAATAGGCAGTATTTGCAGTTTGATCCAGAGACCTATGATTTGCTGCTAAATGAGAAACTGGACCGGGAGGAGCTGTGCGGCTCTACTGAGCCCTGTGTGCTACCCTTCCAAGTGTTACTGGAAAATCCCTTGCAGTTTCTTCAGGCTGCCTTGCTAATTAGAGATATAAATGACCACGCCCCAGAGTTCCCCGCTAGAGAAATGCTACTAAAAATATCAGAAATTACTATGCCAGGAAAGGTATTTCCTTTGAAAATGGCACAGGATTTAGACGCTGGTAGCAACAGCCTTCAGAGCTACAAAATCAGCTCCAATCCTCACTTCCACGTTCTCACTCGGAACCGCAAGGACGGCAGGAAGTCCCCAGAGCTGGTACTGGACAAGGCGTTGGACCGTGAGGAGCAGCCCGAGCTCAGGCTAATCCTCACAGCGCTGGATGGCGGGTCTCCGCCCCGGTCTGGGACCACAAAAATTCAGATTGTGGTCTTGGACATCAATGACAACACCCCCGAGTTTACTCAGGAGTTCTATGAAGCCCAAGTCCCTGAAAATAGCTCCCTGGGCTCTCTGGTTCTCACCGTCTCAGCGAGAGATTTAGACGCAGGATCCTTTGGGGAGGTATCTTATGCCCTATTTCAAGTCGATGATGTTAACCAACCCTTCGAAATAAACGCAAATACGGGAGAAATTCGACTGAGAAAGACACTGGATTTTGAGGAATTTCAATCATATCAGGTGGATGTTGAGGCCACAGATGGTGGGGGACTATCAGGAAAATGCTGTTTAGTCATCAAGGTCCTGGACGTGAATGACAATGCTCCCGAATTGACTATGTCGTCACTTACCAGCCCCATCCCTGAAAACCTGCCAGAGATCATAGTGGCAGTTTTCAGTGTATCAGATGCAGATTCTGGACATAACCAACAGGTTACTTGTTCTATAGATAACAATCTCCCCTTTCTTCTAAGACCATCCGTTGAAAATTTCTACACCTTGGTAACAGAAGGAGCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACCATCACCGTCACTGACATGGGAACCCCCAGGCTGAAAACCGAGCACAACATAACCGTGCTGGTGTCCGACGTCAACGACAACGCCCCCGCCTTCACCCAGACCTCCTACACCCTGTCCGTCCCGTCAAAGTCTGGCAGTGACAATTGA

Related Sequences

bmy_12375T0 SequenceType object (3)

Length: 469 aa      View alignments
>bmy_12375T0
MEMVQTKVHHKKRQVVIFIILILLWEAGSESIQYSILEETESGTFVANLTKDLGLRMGELAARAARVVFKGNRQYLQFDPETYDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFLQAALLIRDINDHAPEFPAREMLLKISEITMPGKVFPLKMAQDLDAGSNSLQSYKISSNPHFHVLTRNRKDGRKSPELVLDKALDREEQPELRLILTALDGGSPPRSGTTKIQIVVLDINDNTPEFTQEFYEAQVPENSSLGSLVLTVSARDLDAGSFGEVSYALFQVDDVNQPFEINANTGEIRLRKTLDFEEFQSYQVDVEATDGGGLSGKCCLVIKVLDVNDNAPELTMSSLTSPIPENLPEIIVAVFSVSDADSGHNQQVTCSIDNNLPFLLRPSVENFYTLVTEGALDRESRAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVPSKSGSDN*