Sequence detailsbmy_12379 (Coding sequence)

Part of scaffold_725 (SequenceType object (1))

For more information consult the page for scaffold_725 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BT.63171ENSBTAG00000030474 (Cow)

Gene Details

protocadherin beta-11

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000054761, Cow)

Protein Percentage 87.69%
cDNA percentage 89.82%
Ka/Ks Ratio 0.27761 (Ka = 0.0694, Ks = 0.25)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDHB14 (Human)   Pcdhb21 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4764 bp    Location:247792..269893   Strand:+
Raw sequence 
>bmy_12379
ATGATTCTAAAAATACCGGAAAACAGTCCTATAGGAATTGCATTCCCTCTGAGTAATGCTCTGGACTTGGATGTAGGCAGCAACAATGTTCAGAACTATAAAATCAGCCCCAACTCCCATTTTCGGGTTCTGACCCGAAATCGCAGCGACGGCAGAAAATACCCTGAGCTGGTGTTGGACAAAGAGCTGGATCGGGAGGAGGAGCCTGAAATCTCATTAACCCTGACAGCGCTGGATGGCGGCTCTCCGCCTCGGTATGGAACCGCCCAGGTGCGCATTGAAGTGGTGGACAGTAACGATAACGCCCCTGAGTTTGAGCAGTCGCTCTACAAGGTGCATATTCCCGAAGACAGCCCCGTAGGCTCCCTGGTTGTCACTGTCTCTGCCAGCGATGTAGACAGTGGAGTCTATGGAAAAATATCATACACATTCTTTCAGCCTTCAGAAGATATTAGCAAAACTTTGGAGGTAAATGCTATGACAGGCGAAATTCGACTGAGAAAAAAAGTAGATTTTGAAACAGTTCTGTCTTATGAAGTGGACATCAAGGCCACTGATGGGGGAGGTCTTTCAGGAAAATGCACTCTTCTCCTGCAAGTAGTGGATGTGAATGACAATCCTCCAGAAGTGACAGTGTCTGCACTCACCACTCCCATCCCAGAGAACTCCCCTGACATTGTAGTTGCTGTTTTCAGTGTTTCAGATCCTGACTCTGGGGACAATGGGAAAACTATTTCCTCCATCCAGGATGACCTTCCTTTTCTTCTAAAACCTTCAGGCAAGAACTTTTACACCTTAGTAACCCAGAAACCACTAGATAGAGAAGAAAGAGACAAGTACAACATCACCATCACCGTCACAGATATGGGAACCCCCAGGCTGAAAACCGAGCACAACATAACCGTACTGGTGTCCGACGTCAACGACAACGCCCCCGCCTTCACCCAGACCTCCTACACCCTGTCCGCAGGTCCTGAGTCTGTGCGCTATTCTGTGGCAGAGGAAACAGAAATTGGCTCTTTTGTGGCCAATCTGGCAAGGGATCTGGGGCTTGGGGTGGAGGAGCTCTCTTCGCGGGAGGCGCGGGTAGTGTGTGATGATAATGAAAAGCATTTGCACCTCGATTTGCTGACCGGGGATTTGCTAGTAAATGAGAAACTGGACCGGGAAGAGCTGTGTGACTCCACGGAGCCCTGTGTGCTGCATTTTCAGATGGTACTGGAAAACCCTTTACAGTTTTTTCGGGCTGAGCTGCATATCAAAGATATAAATGACCACTCCCCTACATTTCTTGACAAGGAAATAGTTATTAAAATATCAGAGAGTACCATTATTGGAACCACATTCCTAATGGAGAGTGCCCAAGATTTGGATGTAGGAAGCAACAATCTCCAAAACTACACAGTTAGCCCGAATTCTCACTTCTACATTAAAATTCAAGACAGTGGTGATGGAAAGATATACCCTGAACTGGTCCTGCACAGAGCGTTGGACCATGAGGAGGAGCCTGAGCTCAGATTAACACTCACAGCACTGGATGGTGGATCCCCGCCCAGGTCTGGGACAACTTTGGTCCTCATCAAGGTCTTGGACATCAATGACAATGCCCCAGAGTTTCCTCAGAGGCTCTATGAGGTGCAGGTCCTGGAGGACACACCTGTTGGCTCTTGGATTATCACCATCTCTGCTAAGGATGTGGATGCAGGAAACTATGGGAAAATATCTTACACATTTTTTCATGCATCAGAAGATATTCGTAAAACATTTGAAATCAATCCACTAKCTGGGGAAGTTCATTTGCGATCACACTTGGATTTTGAAGCAATACAGTCATACATTATAAATATTCAGGCAACAGATGGTGGGGGTCTTTCGGAAGAATGCACTCTTCTGGTTAAAGTAATAGATATAAATGACAATCCACCAGAAGTGACCATGTCATCAATTACAAAGATAATTCCAGAGAGCGCCTCAGAGACCCTTGTGGCTCTTTTTAGTGTCCGAGACCAAGACGCTGGGGAAAATGGGAGGGTCGTTTGCTCTATTCAAGATGACCTCCCATTTTTTCTGAAACGGACCTTCAAGAACTTTTTCACCCTAGTTGCAGAAAAAGCACTGGACAGAGAGGAAAGAGCCGAGTACAACATCACCATCACCGTCACTGACATGGGAACCCCCAGCCTGAAAACCGAGCACAACATAACCGTACTGGTGTCCGACGTCAACGACAACGCCCCCGCCTTCACCCAGACCTCCTACACCCTGCGGAGCGGGGCGGCCTCGGAGGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCGGGCCACCTGGTGGACGTCAGCGGCACGGGGACCCTGTCCCAGAGCTACCAGTACGAGGTGTGTCTCATGGGAGGTACTGGGACGAATGAGTTTAAATTTCTGAAGCCGATTATCCCTAATCTTCCAGTCCAAGACACCGAGACCTGGCGCTATTCTGTGGCAGAGGAAACGGAGATCGGCTCTCTTATAGGCAACGTGGTGAAAGACATAGGTTTGGGCGTGGAAGACCTGGCTGCGCGGGGGGCCAGAGTCATCTTTGATGACTATAAACCATACTTGCAGTTGGATCGGCAGACTGGCAACTTGATCTTAAATGAGAAACTGGACCGGGAGGCGCTTTGCGATCTCACCGAGCCATGCATATTAAATTTCCAGGTATTATTTGAAAATCCTTTGCAATTTTTTCGAGCTGAGCTTAGGGTCAAAGACATAAATGATCACACGCCCACGTTTCTAGACAAACATATACTTCTGAAAATCTCAGAAAGTACTACTCCAGGAACGTCATTCCAAATGGATAGCGCTCAGGACTTGGATGTAGGAAAGAATGCTGTTCAAAACTACACATTAAGCCCCAATCCTCATTTCCACCTTAAACTGCAAGACAGTGAGGAGGGTAGAAAATACCCAGAGCTGTTGCTGGACCAACCTCTGGATCGAGAAAAGGAGCCTGAACTTAGATTAACACTAACAGCCCTGGATGGTGGGTCTCCGCCCAGGTCTGCAACTGCACTGGTGCGTGTGTTGGTCTCAGATATCAATGACAATGCCCCAGAGTTTGAGAGGTCCCTCTATGAGGTTTTAGTACCAGAAAACAGCCCTCTGGACTCCTTGGTCGTCAAGGTGTCTGCTACGGATTTAGATGCAGGACTTAATGGAGAACTATCTTATTCATTTTCCCACGTCTCCAGAGACATACGGAAAACATTTGAAATCCATCCCATTTCTGGCGAAGTCCGTTTAAAAGCACTTCTGGATTTCGAGTTAATTAAGTCTTATACAATAAATATTCAGGCCATTGACGGTGGGAGCCTTTCAGGAAAATCAGCAATTTTAGTTAGTGTTGTAGATGTGAATGACAACCCACCAGAAATAGTCATAACATCTCTTACCAGCCCCATACCGGAAAATTCGTCACCTGAAATGGTAGTCGCTGTTTTTAGCCTACGAGACCAAGACTCTGGGGACAACGGGAGGATGGTTAGCTCAATTCAGGACAATCTCCCCTTTCTCTTGAAGCCTACCTTCAAAAATTTCTACACCCTGGTAACAGAGAGCCCTCTGGACAGAGAGAAAAGAGCCGAGTACAACATCACCATCACCGTCACAGATATGGGAACCCCCAGGCTGAAAACCGAGCACAACATAACCGTGCTGGTGTCCGACGTCAACGACAACGCCCCCGCCTTCACCCAGACCTCCTACACCCTGTCCGTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGTCCGCGCCACAGACAGAGACGCGGGCGCCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCTCGACCCGCACGTGCCCCTGGCCTCCCTGGTGTCCATCAACCCGGACAACGGCCACCTGTTCGCCCTGAGGTCCCTGGACTACGAGGCCCTGCGGGCGTTCGAGTTCCGCGTGGGCGCCGCCGACCGCGGCTCGCCCGCGCTCAGCAGCCAGGCGCTGGTGCGCGTGCTCGTGGCGGACGACAACGACAACGCGCCCTTCGTGCTGTACCCGCTGCAGAACGCCTCGGCGCCCTGCACCGAGCTGGTGCCCAGGGCGGCCGAGGCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTCTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAACGGCGAGGTGCACACAGCCCGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTCGTCAAGGACAACGGCGAGCCGCCGCTGTCGGCCAGCGTCACGCTGCACGTGCTGCTGGTGGACGGCTTCTCGCAGCCCTACCTGCCGGCCCCGGAAGCGGAAGCGGCGGACGCGGCGCCGGCCGCCCCTCTCACCGTCTACCTGGTGGTCGCCTTGGCGTCGGTGTCGTCGCTCTTCCTCTTCTCGGTGCTGGTGTTCGTCGCGGTGCGGCTGTGCAGGAGGGGCGGGGCGGCCTCGGTGGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCGGGCCACCTGGTGGACGTCAGCGGCACGGGGACCCTGTCCCAGAGCTACCAGTACGAGGTGTGTCTGAAGGGGGGCTCTGGGACCAGCGAGTTCAAGTTTCTTAAGTCTGTTGCCTCCAATCATCAGGAGTCTGTAAATGATGTAGAGGAAAACTCAAACTTTATAAATGGTTTTGGATTCAATTAG

Related Sequences

bmy_12379T0 SequenceType object (3)

Length: 1588 aa      
>bmy_12379T0
MILKIPENSPIGIAFPLSNALDLDVGSNNVQNYKISPNSHFRVLTRNRSDGRKYPELVLDKELDREEEPEISLTLTALDGGSPPRYGTAQVRIEVVDSNDNAPEFEQSLYKVHIPEDSPVGSLVVTVSASDVDSGVYGKISYTFFQPSEDISKTLEVNAMTGEIRLRKKVDFETVLSYEVDIKATDGGGLSGKCTLLLQVVDVNDNPPEVTVSALTTPIPENSPDIVVAVFSVSDPDSGDNGKTISSIQDDLPFLLKPSGKNFYTLVTQKPLDREERDKYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSAGPESVRYSVAEETEIGSFVANLARDLGLGVEELSSREARVVCDDNEKHLHLDLLTGDLLVNEKLDREELCDSTEPCVLHFQMVLENPLQFFRAELHIKDINDHSPTFLDKEIVIKISESTIIGTTFLMESAQDLDVGSNNLQNYTVSPNSHFYIKIQDSGDGKIYPELVLHRALDHEEEPELRLTLTALDGGSPPRSGTTLVLIKVLDINDNAPEFPQRLYEVQVLEDTPVGSWIITISAKDVDAGNYGKISYTFFHASEDIRKTFEINPLXGEVHLRSHLDFEAIQSYIINIQATDGGGLSEECTLLVKVIDINDNPPEVTMSSITKIIPESASETLVALFSVRDQDAGENGRVVCSIQDDLPFFLKRTFKNFFTLVAEKALDREERAEYNITITVTDMGTPSLKTEHNITVLVSDVNDNAPAFTQTSYTLRSGAASEGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLMGGTGTNEFKFLKPIIPNLPVQDTETWRYSVAEETEIGSLIGNVVKDIGLGVEDLAARGARVIFDDYKPYLQLDRQTGNLILNEKLDREALCDLTEPCILNFQVLFENPLQFFRAELRVKDINDHTPTFLDKHILLKISESTTPGTSFQMDSAQDLDVGKNAVQNYTLSPNPHFHLKLQDSEEGRKYPELLLDQPLDREKEPELRLTLTALDGGSPPRSATALVRVLVSDINDNAPEFERSLYEVLVPENSPLDSLVVKVSATDLDAGLNGELSYSFSHVSRDIRKTFEIHPISGEVRLKALLDFELIKSYTINIQAIDGGSLSGKSAILVSVVDVNDNPPEIVITSLTSPIPENSSPEMVVAVFSLRDQDSGDNGRMVSSIQDNLPFLLKPTFKNFYTLVTESPLDREKRAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDAGANAQVTYSLLPPLDPHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPALSSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVHTARLLSERDAAKHRLVVLVKDNGEPPLSASVTLHVLLVDGFSQPYLPAPEAEAADAAPAAPLTVYLVVALASVSSLFLFSVLVFVAVRLCRRGGAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLKGGSGTSEFKFLKSVASNHQESVNDVEENSNFINGFGFN*