Sequence details bmy_12402 (Coding sequence)

Part of scaffold_725 (Scaffold)

For more information consult the page for scaffold_725 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH1 ENSBTAG00000012518 (Cow)

Gene Details

protocadherin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016618, Cow)

Protein Percentage 96.51%
cDNA percentage 92.16%
Ka/Ks Ratio 0.05085 (Ka = 0.0193, Ks = 0.3787)

PCDH1  (Minke Whale)

Gene Details

protocadherin 1

External Links

Gene match (Identifier: BACU015977, Minke Whale)

Protein Percentage 99.67%
cDNA percentage 99.2%
Ka/Ks Ratio 0.04597 (Ka = 0.0014, Ks = 0.0313)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDH1 (Human)   Pcdh1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3714 bp    Location:836470..813540   Strand:-
Raw sequence 
>bmy_12402
ATGGACTGCAGGGCCCGCGGCCTGCGCTGCCCAGAGGCGGCCCTCCTGATTCTGGAGCCTGCCCGGATGGGGTCCCTGAGGCACAGCCCAGGCCCTGGGGGGCAACGGTTGCTGCTGCCCGCCTTGCTGCTGGCACTTCTGCTGCTGCTGGCTCCATCCCCAGGCCACGCCACTCGGGTGGTGTACAAGGTGCCAGAGGAACAACCGCCCAACACCCTCATTGGGAGCCTCGCAGCCGATTATGGTTTTCCAGACGTGGGCCACCTATACAAACTAGAAGTAGGCGCCCCGTACCTGCGGGTGGATGGCAAGACGGGCGACATCTTTACCACGGAGACCTCTATCGACCGCGAGGGGCTCCGTGAATGCCAGAACCAGCTCCCTGGTGAGCCCTGCATCCTGGAGTTTGAGGTGTCTATCACGGACCTCGTGCAGAATGGCAGCCCCCGGCTGCTAGAGGGCCAGATAGAGGTCCAGGACATCAATGACAACACGCCCAACTTCGCCTCACCAGTCATCACGCTGCCCATCCCCGAGAACACCAACATTGGCTCACTCTTCCCCATCCCGGTGGCTTCGGACCGCGATGCTGGCCCCAACGGTGTGGCATCCTATGAGCTGCAGGTGGGGCCCGAGGCCCAGGAGCTATTTGGGCTGCAGGTGGCAGAGGACCAGGACGGAAAGCAGCCGCAGCTCATCGTGATGGGCAACCTGGACCGGGAGCGCTTGGACTCGTATGACCTCACTATCAAGGTGCAGGATGGTGGCAACCCCCCACGCGCCAGCAGTGCCCTGCTGCGAGTCACCGTGCTCGACACCAATGACAATGCCCCCAAGTTCGAGCGGCCATCCTACGAGGCTGAGCTGTCTGAGAACAGCCCCATAGGACACTCGGTCATCCAGGTGAAGGCCAATGACTCCGACCAAGGTGCCAACGCAGAGATCGACTACACATTCCACCAGGCGCCCGAAGTTGTGAGGCGTCTTCTGAGACTGGACAGGAACACGGGACTTATCACCGTGCAGGGCCCCGTGGACCGCGAGGACCTAAGCACCCTGCGCTTCTCGGTGCTTGCCAAGGACCGAGGCACCAACCCCAAGAGTGCCCGAGCCCAAGTGGTGGTGACCGTGAAGGACATGAACGACAATGCCCCCACCATTGAGATCCGGGGCATAGGGCTGGTGACTCACCAAGACGGGATGGCTAACATCTCAGAGGACGTGGCAGAAGAGACAGCTGTGGCCCTGGTGCAGGTATCTGACCGAGATGAGGGAGAAAATGCAGCTGTCACCTGTGTGGTGGCAGGTGATGTGCCCTTCCAGCTCCGCCAGGCCAGTGACACGGGAAGTGACAGCAAGAAGAAGTACTTCCTGCAGACCACCACCCCGCTCGACTATGAGAAGGTCAAAGACTATACCATTGAGATTGTGGCCGTGGACTCTGGCAACCCCCCACTCTCGAGCACCAACTCCCTCAAGGTGCAGGTGGTGGATGTCAATGACAATGCACCTGTCTTCACCCAGAGCGTCACTGAGGTTGCCTTCCCAGAAAACAACAAGCCAGGTGAAGTGGTCGCTGAGGTCACTGCCAGTGATGCCGACTCGGGCTCCAATGCTGAGCTGGTTTACTCTCTGGAGCCTGAGCCGGCTGCCAAGGGCCTCTTCACCATCTCACCTGAAACTGGAGAGATCCGGGTGAAGACATCCCTTGATAGGGAACAGAGGGAAAGCTACGAGTTGAAGGTGGTGGCAGCCGACCGGGGCAGCCCCAGCCTCCAAGGCACAGCCACCGTCCTTGTCAACGTGCTGGACTGCAATGACAATGACCCCAAGTTTATGCTGAGTGGCTACAACTTCTCAGTGATGGAGAACATGCCGGCGCTGAGTCCAGTGGGCATGGTGACGGTCATTGATGGGGACAAGGGGGAGAACGCCCGGGTGCAGCTCACAGTGGAGCAGGACAATGGTGATTTTGTTATCCAGAACGGCACGGGCACTATCCTCTCCAGCCTGAGCTTCGATCGGGAGCACCAAAGCACCTATACCTTCCAGCTGAAGGCGGTGGACGGCGGCGTCCCACCTCGCTCGGCTTACGTTGGCGTCACCATCAACGTGCTGGATGAGAATGACAATGCACCCTTTATCACCGCCCCTTCCAACACCTCCCACCGGCTGCTGACCCCGCAGACCCGTCTGGGTGAGACGGTCAGCCAGGTGACAGCTGAGGACATTGACTCTGGTGTTAACGCTGAGCTGACCTACAGCATCGCCGGTGGCAACCCTTACGGACTCTTCCAGATTGGGTCACATTCCGGTGCCATCACCCTGGAAAAGGAGATTGAGCGGCGCCACCACGGGCTGCACCGCTTAGTGGTGAAGGTCAGTGACCGCGGCAAGCCCCCTCGCTATGGCACAGCCTTGGTCCACTTGTATGTCAATGACACCCTGGCCAACCGCACCCTGCTGGAGACCCTGCTGGGCCACAGCCTGGACACGCCGCTGGACATCGACATTGCTGGGGATCCGGAATACGAGCGCTCCAAGCAGCGCAGCAACATCCTATTTGGCGTGGTGGCGGGTGTCGTGGCCGTGGCCTTGCTCATCGCCCTGGCCGTGCTCGTGCGCTACTGCCGGCAACGGGAGGCCAAGAGTGGCTACCAGGCTGGCAAGAAGGAGACCAAGGACCTGTATGCTCCCAAGCCCAGCAGCAAAGTTTCCAAGGGAAACAAAAGCAAGGGCAAGAAGAGCAAGTCTCCCAAGCCCGTGAAGCCAGTGGAGGACGAGGATGAGGCCGGGCTGCAGAAATCCCTCAAGTTCAACCTGATGAGCGATGCCCCTGGGGACAGCCCCCGCATCCACCTGCCCCTCAACTACCCACCAGGCAGCCCTGACCTCGGCCGCCACTATCGCTCTAATTCCCCGCTGCCTTCCATCCAGCTGCAGCCCCAGTCACCCTCCGCCTCCAAGAAGCACCAGGTGGTGCAGGACCTGCCGCCAGCCAACACTTTCGTGGGCACTGGGGACACGACGTCCACGGGCTCTGAGCAGTACTCCGACTACAGCTACCGTACCAACCCCCCCAAATACCCCAGCAAGCAGTTACCTCACCGGCGCGTCACCTTCTCCGCCACCAGCCAGGCGCAGGAGCTGCAGGACCCGTCCCAGCACAGTTACTACGACAGTGGCCTGGAGGAGTCTGAGACGCCGTCCAGCAAGTCATCCTCGGGGCCCCGACTCGGTCCCCTGGCTCTGCCTGAGGATCACTATGAGCGCACCACCCCCGATGGCAGCATAGGAGAGATGGAGCACCCCGAGAACGACCTGCGCCCTTTGCCTGACGTCGCCATGACGGGCACATGTACCCGGGAGTGCAGTGAGTTTGGCCACTCCGACACGTGCTGGATGCCTGGCCAGTCGTCTCCCAGCCGCCGGACCAAGAGCAGCGCCCTCAAACTCTCCACCTTCGTGCCTTACCAGGACCGAGGAGGGCAGGAGCCTGCGGGCGCCGGCAGCCCCAGCCCCCCGGAAGACCGGAACACCAAAACGGCCCCCGTGCGCCTCCTGCCCTCCTACAGTGCCTTCTCCCACAGTAGCCATGATTCCTGCAAGGACTCGGCCACCTTGGAGGAAATCCCCCTGACCCAGACCTCGGACTTCCCACCTGCAGCCACACCGGCATCTGCCCAGACGGCCAAGCGCGAGATCTACCTGTGA

Related Sequences

bmy_12402T0 Protein

Length: 1238 aa      View alignments
>bmy_12402T0
MDCRARGLRCPEAALLILEPARMGSLRHSPGPGGQRLLLPALLLALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPENTNIGSLFPIPVASDRDAGPNGVASYELQVGPEAQELFGLQVAEDQDGKQPQLIVMGNLDRERLDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASDTGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVIQNGTGTILSSLSFDREHQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNDTLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRSNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSSKVSKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL*