Sequence details bmy_12405 (Coding sequence)

Part of scaffold_725 (Scaffold)

For more information consult the page for scaffold_725 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH12 ENSTTRG00000012143 (Bottlenosed dolphin)

Gene Details

protocadherin 12

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011509, Bottlenosed dolphin)

Protein Percentage 96.03%
cDNA percentage 95.8%
Ka/Ks Ratio 0.14722 (Ka = 0.0072, Ks = 0.0492)

PCDH12 ENSBTAG00000008437 (Cow)

Gene Details

protocadherin-12 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011099, Cow)

Protein Percentage 92.98%
cDNA percentage 92.81%
Ka/Ks Ratio 0.16949 (Ka = 0.0352, Ks = 0.2075)

PCDH12  (Minke Whale)

Gene Details

protocadherin 12

External Links

Gene match (Identifier: BACU015980, Minke Whale)

Protein Percentage 99.5%
cDNA percentage 99.25%
Ka/Ks Ratio 0.1161 (Ka = 0.0024, Ks = 0.0204)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDH12 (Human)   Pcdh12 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3600 bp    Location:894866..882150   Strand:-
Raw sequence 
>bmy_12405
ATGATGCGACTTCTGCCACTTCTGCTGGGACTTTTGGGGCCAGGTGGCTACTTGTTCCTTTCAGGGGATTGTCAGGAGGTCGCCACTCTCACTGTGAAATATCAAGTGTCAGAGGAAGTACCGTCCGGCACAGTGATAGGGAAGCTGTCTCAGGAACTGGGCCGGGAGGAGAGGTCTGGGCGAGCAGGGGCTGCCTTCCAGGTCTTGCAGCTGCCTCAGGCGCTCCCCATCCAAGTGGACTCCAAGGATGGCCTGCTTAGCACAGGGAGGCGGCTGGACCGGGAGCAGCTTTGCCGGCAGCAGGATCCCTGCCTGGTTTCCTTTGACGTGCTTGCCACAGGGGATTTGGCTCTCATCCACGTGGAGATCCAGGTGCTGGACATCAATGACCACCAGCCACGGTTTCCCAAAGGTGAGCAGGAGCTGGAAATCTCTGAGAGCGCCTCCCTGCGCACCCGGATCCCCCTGGACAGAGCTCTGGACCCAGACACTGGCCCCAACACCCTGCACTCCTACACCCTGTCTCCCAGCGAGCATTTTGCCCTGGATGTCATTGTGGGGCCCGATGAGACCAAACACGCGGAACTCGTGGTGGTGAAGGAGCTGGACCGGGAAATCCACTCATTTTTTGATCTGGTGTTAACTGCCTATGACAGTGGGAGCCCCCCCAAGTCAGGCACCAGCTTGGTCAAGGTCAATGTCCTGGATTCCAATGACAATAGCCCTGTGTTTGCTGAGAGCTCGCTGGCACTAGAAATCCAAGAAGACGCTTCCCCTGGTACTCTCCTTATAAACTTGACTGCCACAGACCCTGATCAAGGCCCCAACGGGGAGGTGGAATACTTCCTCAGTAAGCATGTGCCTCCAGAGGTGCTGGACACCTTCAGTATTGATGCCAAGACAGGCCAGGTGATTCTGCGTCAACCCCTAGACTATGAGAAGAATCCTGCCTACGAGGTGGACGTCCAGGCAAGGGACCTGGGTCCCAATCCCATCCCAGCCCACTGCAAAATTCTCATTAAGGTTCTGGATGTCAATGACAACACCCCAAGCATCCACATCACATGGGCCTCCCAACCATCACTGGTGTCCGAAGCTCTTCCCAAGGACAGTTTCATTGCTCTCATCATGGCAAAAGACCTAGACTCAGGAAACAATGGTCTGGTCCACTGTTGGCTGAGCCAAGAGCTGGGCCACTTCAGGCTGAAAAGGACCAATGGCAACACATACATGCTGCTAACCAATGCCACGCTGGACAGAGAGCAGTGGCCGCAATATACCCTCACTCTTTTGGCCCAAGACCAAGGACCCCAGCCCTTATCAGTCAAGAAACAGCTCAGCATTCAGATCAGTGATGCCAACGACAACGCACCTGTGTTTGAGAAAAGCAGGTACCAGGTCTCCACTCGGGAAAACAACCTACCCTCTCTTCACCTCATTACCATCAAGGCCCATGATGCAGATCTGGGCGTTAATGGGAAAATCTCATACCACATCCAGGACTCCCCAGTTTCTCACTTGGTAGCTATTGACTCAGACACAGGCGAGGTCACCGCTCAGAGGTCACTGGACTATGAACAGATGGCCGGCTTTGAGTTCCTGGTGATCGCAGAGGACAGGGGGCAGCCCCAGCTTGCATCCAGTGTCTCTGTGTGGGTCAGCCTCCTGGATGCCAATGATAATGCCCCAGAGGTGATTCACCCCATACTCAGCGATGGGAAAGCCAGCCTCTCRGTGCTTGTAAATGCCTCCACAGGTCACCTGCTGGTGCCCATTGAAACTCCCAATGGCGTGGGTCCAGCAGGCACTGACGTGCCACCACAGGCCACCCCCAGCTCCCGGCCATTCCTTTTGGTGACCATTGTAGCAAGAGATGCAGACTCGGGGGCGAATGGAGAGCTCCTCTACAGCATTCAGAGTGGGAACGAAGCTGGTCTCTTCGTCCTCAGCCCCCACCTGGGGCAGCTCTTCATCAACATCACCAATGCCAGCAGCCTCACTGGGAGTGAGTGGGAGCTGGAGATCGTGGTGGAAGACCGAGGCAGCCCCTCCTTACAGACCCGAGCCCTGTTGAGGGTCTTCTTCGTCACCAGTGTGGACCACTTGAGGGACTCAGCCCGTGAGCCTGGGGCTCTGAGCACATCGGTGCTCACAGTGATTTGCCTGGTCGTACTGCTGGCCATCTCCGGGTTGATCTTGGCTCTGATTATGTCCATTTGCCGGACGGAGAAGAAGGACAACAGGGCCTACAACTGTCGGGAGGCCGAGTCCACCTACCGTCACCAGCCCAAGAGGCCCCAGAAACACATCCAGAAGGCGGACATCCACCTCGTGCCTGTGCTCAGGGGCCAGGTGGATGAGCCTGGCGAAGCTGGGCAGCCCCCCAAGCACGTGGGCAAGGAAGCGATGATGGAAGCAGGCTGGGACCCCTGCCTGCAGGCCCCCTTTCATCTCACACCAACCCTGTACAGGACTCTGCGTAACCAAGGTAACCAGGGAACGCTGGCCGAGAGCCGAGAGGTGCTGCAGGACACTGTCAACCTCCTTTTCAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTGAACCTTCCCGAGCCCCAACCTGCGACGGGCCAGCCCCGCTCAAGGCCCCTGAAGGTTGCGGGCAGCCCCACAGGGAGGGTGCCTGGGGACCAGGGCAGTAAGGAGGCCCCGCTGAGCCCCCCAGCCTCCTCTGCAACCCTGAGGCGGCAGCGGAATCTCCATGGCAAAGTAGCCCCTGAGAAAGAGTCAGGCCCCCGTCAGATCCTGCGGAGCCTGGTCCGGCTGTCTGTGGCTGCCTTTGCGGAGCGGAACCCCGTAGAGGAGCTCACTGTGGATTCGCCTCCTGTTCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCATCAGGGCCAATTCCAGCCCAAACCAAACCACCGGGGAAATAAGTACTTGGCCAAGCCCGGCGGCAGCAGGAGTGCAATCCCAGACACAGATGGCCCAGGTGCCAGGGCTGGTGGCCAGGCAGAACCGGATCAGGAGGAAGGGCCCTTGGACCCTGAGGAGGACCTCTCTGTGAAGCAGCTGCTAGAAGAAGAGCTGTCGAACCTGCTGGACCCCTACACAGGCCTGACCCTGGACCGGCTGAGCGTCCCCGACCCGGCCTGGATGGCAAGACTCTCTTTGCCCCTCGCCACCAACTACCGTGACAACGTGTTCTCCCCGGACGCTGCGACCTCGGAGGAGCCCAGGACCTTCCAGACGTTCGGCAAGGCGCCGGGGCCCGAGCTGAGCCCGACGGGCACGCGGCTGGCCAGCACCTTCCTGTCGGAGATGAGCTCACTGCTGGAGATGCTGCTGGAGCAGCGCCCCGCCGTGCCGGTGGAGGCCGCCTCCGAGGTGCTGCGGCGGCTCTCAGTCTGCGGAAGGACCCTGAGTCTAGACCTAGCCACCAGCGGGGCCTCGGGCTCCGAAGGCCCTGGGGTCCGAGCTGGAAAGCAGGGGGCCGAGGGCAGGACCAGCAGCGGCAGCAGCAGCAGGGGCCTGTGGATCCAGGAACCAGGGGCCCCGGGAGATGTTAGGAAGCCCAGGCCCTGA

Related Sequences

bmy_12405T0 Protein

Length: 1200 aa      View alignments
>bmy_12405T0
MMRLLPLLLGLLGPGGYLFLSGDCQEVATLTVKYQVSEEVPSGTVIGKLSQELGREERSGRAGAAFQVLQLPQALPIQVDSKDGLLSTGRRLDREQLCRQQDPCLVSFDVLATGDLALIHVEIQVLDINDHQPRFPKGEQELEISESASLRTRIPLDRALDPDTGPNTLHSYTLSPSEHFALDVIVGPDETKHAELVVVKELDREIHSFFDLVLTAYDSGSPPKSGTSLVKVNVLDSNDNSPVFAESSLALEIQEDASPGTLLINLTATDPDQGPNGEVEYFLSKHVPPEVLDTFSIDAKTGQVILRQPLDYEKNPAYEVDVQARDLGPNPIPAHCKILIKVLDVNDNTPSIHITWASQPSLVSEALPKDSFIALIMAKDLDSGNNGLVHCWLSQELGHFRLKRTNGNTYMLLTNATLDREQWPQYTLTLLAQDQGPQPLSVKKQLSIQISDANDNAPVFEKSRYQVSTRENNLPSLHLITIKAHDADLGVNGKISYHIQDSPVSHLVAIDSDTGEVTAQRSLDYEQMAGFEFLVIAEDRGQPQLASSVSVWVSLLDANDNAPEVIHPILSDGKASLSVLVNASTGHLLVPIETPNGVGPAGTDVPPQATPSSRPFLLVTIVARDADSGANGELLYSIQSGNEAGLFVLSPHLGQLFINITNASSLTGSEWELEIVVEDRGSPSLQTRALLRVFFVTSVDHLRDSAREPGALSTSVLTVICLVVLLAISGLILALIMSICRTEKKDNRAYNCREAESTYRHQPKRPQKHIQKADIHLVPVLRGQVDEPGEAGQPPKHVGKEAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGTLAESREVLQDTVNLLFNHPRQRNASRENLNLPEPQPATGQPRSRPLKVAGSPTGRVPGDQGSKEAPLSPPASSATLRRQRNLHGKVAPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLHQGQFQPKPNHRGNKYLAKPGGSRSAIPDTDGPGARAGGQAEPDQEEGPLDPEEDLSVKQLLEEELSNLLDPYTGLTLDRLSVPDPAWMARLSLPLATNYRDNVFSPDAATSEEPRTFQTFGKAPGPELSPTGTRLASTFLSEMSSLLEMLLEQRPAVPVEAASEVLRRLSVCGRTLSLDLATSGASGSEGPGVRAGKQGAEGRTSSGSSSRGLWIQEPGAPGDVRKPRP*