Sequence detailsbmy_12405 (Coding sequence)

Part of scaffold_725 (SequenceType object (1))

For more information consult the page for scaffold_725 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH12ENSTTRG00000012143 (Bottlenosed dolphin)

Gene Details

protocadherin 12

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011509, Bottlenosed dolphin)

Protein Percentage 96.03%
cDNA percentage 95.8%
Ka/Ks Ratio 0.14722 (Ka = 0.0072, Ks = 0.0492)

PCDH12ENSBTAG00000008437 (Cow)

Gene Details

protocadherin-12 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000011099, Cow)

Protein Percentage 92.98%
cDNA percentage 92.81%
Ka/Ks Ratio 0.16949 (Ka = 0.0352, Ks = 0.2075)

PCDH12 (Minke Whale)

Gene Details

protocadherin 12

External Links

Gene match (Identifier: BACU015980, Minke Whale)

Protein Percentage 99.5%
cDNA percentage 99.25%
Ka/Ks Ratio 0.1161 (Ka = 0.0024, Ks = 0.0204)

Additional orthologs identified in other species via the OPTIC pipeline.

PCDH12 (Human)   Pcdh12 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3600 bp    Location:894866..882150   Strand:-
Raw sequence 
>bmy_12405
ATGATGCGACTTCTGCCACTTCTGCTGGGACTTTTGGGGCCAGGTGGCTACTTGTTCCTTTCAGGGGATTGTCAGGAGGTCGCCACTCTCACTGTGAAATATCAAGTGTCAGAGGAAGTACCGTCCGGCACAGTGATAGGGAAGCTGTCTCAGGAACTGGGCCGGGAGGAGAGGTCTGGGCGAGCAGGGGCTGCCTTCCAGGTCTTGCAGCTGCCTCAGGCGCTCCCCATCCAAGTGGACTCCAAGGATGGCCTGCTTAGCACAGGGAGGCGGCTGGACCGGGAGCAGCTTTGCCGGCAGCAGGATCCCTGCCTGGTTTCCTTTGACGTGCTTGCCACAGGGGATTTGGCTCTCATCCACGTGGAGATCCAGGTGCTGGACATCAATGACCACCAGCCACGGTTTCCCAAAGGTGAGCAGGAGCTGGAAATCTCTGAGAGCGCCTCCCTGCGCACCCGGATCCCCCTGGACAGAGCTCTGGACCCAGACACTGGCCCCAACACCCTGCACTCCTACACCCTGTCTCCCAGCGAGCATTTTGCCCTGGATGTCATTGTGGGGCCCGATGAGACCAAACACGCGGAACTCGTGGTGGTGAAGGAGCTGGACCGGGAAATCCACTCATTTTTTGATCTGGTGTTAACTGCCTATGACAGTGGGAGCCCCCCCAAGTCAGGCACCAGCTTGGTCAAGGTCAATGTCCTGGATTCCAATGACAATAGCCCTGTGTTTGCTGAGAGCTCGCTGGCACTAGAAATCCAAGAAGACGCTTCCCCTGGTACTCTCCTTATAAACTTGACTGCCACAGACCCTGATCAAGGCCCCAACGGGGAGGTGGAATACTTCCTCAGTAAGCATGTGCCTCCAGAGGTGCTGGACACCTTCAGTATTGATGCCAAGACAGGCCAGGTGATTCTGCGTCAACCCCTAGACTATGAGAAGAATCCTGCCTACGAGGTGGACGTCCAGGCAAGGGACCTGGGTCCCAATCCCATCCCAGCCCACTGCAAAATTCTCATTAAGGTTCTGGATGTCAATGACAACACCCCAAGCATCCACATCACATGGGCCTCCCAACCATCACTGGTGTCCGAAGCTCTTCCCAAGGACAGTTTCATTGCTCTCATCATGGCAAAAGACCTAGACTCAGGAAACAATGGTCTGGTCCACTGTTGGCTGAGCCAAGAGCTGGGCCACTTCAGGCTGAAAAGGACCAATGGCAACACATACATGCTGCTAACCAATGCCACGCTGGACAGAGAGCAGTGGCCGCAATATACCCTCACTCTTTTGGCCCAAGACCAAGGACCCCAGCCCTTATCAGTCAAGAAACAGCTCAGCATTCAGATCAGTGATGCCAACGACAACGCACCTGTGTTTGAGAAAAGCAGGTACCAGGTCTCCACTCGGGAAAACAACCTACCCTCTCTTCACCTCATTACCATCAAGGCCCATGATGCAGATCTGGGCGTTAATGGGAAAATCTCATACCACATCCAGGACTCCCCAGTTTCTCACTTGGTAGCTATTGACTCAGACACAGGCGAGGTCACCGCTCAGAGGTCACTGGACTATGAACAGATGGCCGGCTTTGAGTTCCTGGTGATCGCAGAGGACAGGGGGCAGCCCCAGCTTGCATCCAGTGTCTCTGTGTGGGTCAGCCTCCTGGATGCCAATGATAATGCCCCAGAGGTGATTCACCCCATACTCAGCGATGGGAAAGCCAGCCTCTCRGTGCTTGTAAATGCCTCCACAGGTCACCTGCTGGTGCCCATTGAAACTCCCAATGGCGTGGGTCCAGCAGGCACTGACGTGCCACCACAGGCCACCCCCAGCTCCCGGCCATTCCTTTTGGTGACCATTGTAGCAAGAGATGCAGACTCGGGGGCGAATGGAGAGCTCCTCTACAGCATTCAGAGTGGGAACGAAGCTGGTCTCTTCGTCCTCAGCCCCCACCTGGGGCAGCTCTTCATCAACATCACCAATGCCAGCAGCCTCACTGGGAGTGAGTGGGAGCTGGAGATCGTGGTGGAAGACCGAGGCAGCCCCTCCTTACAGACCCGAGCCCTGTTGAGGGTCTTCTTCGTCACCAGTGTGGACCACTTGAGGGACTCAGCCCGTGAGCCTGGGGCTCTGAGCACATCGGTGCTCACAGTGATTTGCCTGGTCGTACTGCTGGCCATCTCCGGGTTGATCTTGGCTCTGATTATGTCCATTTGCCGGACGGAGAAGAAGGACAACAGGGCCTACAACTGTCGGGAGGCCGAGTCCACCTACCGTCACCAGCCCAAGAGGCCCCAGAAACACATCCAGAAGGCGGACATCCACCTCGTGCCTGTGCTCAGGGGCCAGGTGGATGAGCCTGGCGAAGCTGGGCAGCCCCCCAAGCACGTGGGCAAGGAAGCGATGATGGAAGCAGGCTGGGACCCCTGCCTGCAGGCCCCCTTTCATCTCACACCAACCCTGTACAGGACTCTGCGTAACCAAGGTAACCAGGGAACGCTGGCCGAGAGCCGAGAGGTGCTGCAGGACACTGTCAACCTCCTTTTCAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTGAACCTTCCCGAGCCCCAACCTGCGACGGGCCAGCCCCGCTCAAGGCCCCTGAAGGTTGCGGGCAGCCCCACAGGGAGGGTGCCTGGGGACCAGGGCAGTAAGGAGGCCCCGCTGAGCCCCCCAGCCTCCTCTGCAACCCTGAGGCGGCAGCGGAATCTCCATGGCAAAGTAGCCCCTGAGAAAGAGTCAGGCCCCCGTCAGATCCTGCGGAGCCTGGTCCGGCTGTCTGTGGCTGCCTTTGCGGAGCGGAACCCCGTAGAGGAGCTCACTGTGGATTCGCCTCCTGTTCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCATCAGGGCCAATTCCAGCCCAAACCAAACCACCGGGGAAATAAGTACTTGGCCAAGCCCGGCGGCAGCAGGAGTGCAATCCCAGACACAGATGGCCCAGGTGCCAGGGCTGGTGGCCAGGCAGAACCGGATCAGGAGGAAGGGCCCTTGGACCCTGAGGAGGACCTCTCTGTGAAGCAGCTGCTAGAAGAAGAGCTGTCGAACCTGCTGGACCCCTACACAGGCCTGACCCTGGACCGGCTGAGCGTCCCCGACCCGGCCTGGATGGCAAGACTCTCTTTGCCCCTCGCCACCAACTACCGTGACAACGTGTTCTCCCCGGACGCTGCGACCTCGGAGGAGCCCAGGACCTTCCAGACGTTCGGCAAGGCGCCGGGGCCCGAGCTGAGCCCGACGGGCACGCGGCTGGCCAGCACCTTCCTGTCGGAGATGAGCTCACTGCTGGAGATGCTGCTGGAGCAGCGCCCCGCCGTGCCGGTGGAGGCCGCCTCCGAGGTGCTGCGGCGGCTCTCAGTCTGCGGAAGGACCCTGAGTCTAGACCTAGCCACCAGCGGGGCCTCGGGCTCCGAAGGCCCTGGGGTCCGAGCTGGAAAGCAGGGGGCCGAGGGCAGGACCAGCAGCGGCAGCAGCAGCAGGGGCCTGTGGATCCAGGAACCAGGGGCCCCGGGAGATGTTAGGAAGCCCAGGCCCTGA

Related Sequences

bmy_12405T0 SequenceType object (3)

Length: 1200 aa      View alignments
>bmy_12405T0
MMRLLPLLLGLLGPGGYLFLSGDCQEVATLTVKYQVSEEVPSGTVIGKLSQELGREERSGRAGAAFQVLQLPQALPIQVDSKDGLLSTGRRLDREQLCRQQDPCLVSFDVLATGDLALIHVEIQVLDINDHQPRFPKGEQELEISESASLRTRIPLDRALDPDTGPNTLHSYTLSPSEHFALDVIVGPDETKHAELVVVKELDREIHSFFDLVLTAYDSGSPPKSGTSLVKVNVLDSNDNSPVFAESSLALEIQEDASPGTLLINLTATDPDQGPNGEVEYFLSKHVPPEVLDTFSIDAKTGQVILRQPLDYEKNPAYEVDVQARDLGPNPIPAHCKILIKVLDVNDNTPSIHITWASQPSLVSEALPKDSFIALIMAKDLDSGNNGLVHCWLSQELGHFRLKRTNGNTYMLLTNATLDREQWPQYTLTLLAQDQGPQPLSVKKQLSIQISDANDNAPVFEKSRYQVSTRENNLPSLHLITIKAHDADLGVNGKISYHIQDSPVSHLVAIDSDTGEVTAQRSLDYEQMAGFEFLVIAEDRGQPQLASSVSVWVSLLDANDNAPEVIHPILSDGKASLSVLVNASTGHLLVPIETPNGVGPAGTDVPPQATPSSRPFLLVTIVARDADSGANGELLYSIQSGNEAGLFVLSPHLGQLFINITNASSLTGSEWELEIVVEDRGSPSLQTRALLRVFFVTSVDHLRDSAREPGALSTSVLTVICLVVLLAISGLILALIMSICRTEKKDNRAYNCREAESTYRHQPKRPQKHIQKADIHLVPVLRGQVDEPGEAGQPPKHVGKEAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGTLAESREVLQDTVNLLFNHPRQRNASRENLNLPEPQPATGQPRSRPLKVAGSPTGRVPGDQGSKEAPLSPPASSATLRRQRNLHGKVAPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLHQGQFQPKPNHRGNKYLAKPGGSRSAIPDTDGPGARAGGQAEPDQEEGPLDPEEDLSVKQLLEEELSNLLDPYTGLTLDRLSVPDPAWMARLSLPLATNYRDNVFSPDAATSEEPRTFQTFGKAPGPELSPTGTRLASTFLSEMSSLLEMLLEQRPAVPVEAASEVLRRLSVCGRTLSLDLATSGASGSEGPGVRAGKQGAEGRTSSGSSSRGLWIQEPGAPGDVRKPRP*