Part of scaffold_729 (Scaffold)

For more information consult the page for scaffold_729 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA4F ENSBTAG00000006989 (Cow)

Gene Details

SEMA4F protein; Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009186, Cow)

Protein Percentage 92.61%
cDNA percentage 92.91%
Ka/Ks Ratio 0.24702 (Ka = 0.0406, Ks = 0.1644)

SEMA4F  (Minke Whale)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

External Links

Gene match (Identifier: BACU010584, Minke Whale)

Protein Percentage 98.47%
cDNA percentage 98.79%
Ka/Ks Ratio 0.30704 (Ka = 0.0074, Ks = 0.0241)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2322 bp    Location:827099..851436   Strand:+
>bmy_12436
ATGCCGACCTCTGTTGCGCGGCCCCGCCCGTGCCCGGGGCCGTCCCCGGCCTCGCCGTTACCGCTGCTGCTGCTGCTGCTGCTGGAGGTGCTAAGCGGCCCGGTGTGTGGCCGCGTCTCGCCTTCGGTGCCCAGGATCTCGCTTCCTATCTCCGAGGCTGACTCCTATCTCACCCGGTTCACCATCCCTCAGACATACAATTACTCCATTCTCCTTGTGGATCCTGCTTCCCATATGCTTTATGTCGGCGCCCGGGACACCATCTTCGCTTTATCCTTGCCCTTTTCAGGGGAGAGACCTCGCAGGATTGACTGGATGGTGCCTGAGGCCCACAGACAGAACTGTAGGAAGAAAGGCAAGAAGGAGGAAGAATGTCACAATTTTGTCCAGATTCTCGCCATTGCCAATGCCTCTCACCTCCTCATTTGTGGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGTTTCCAGCAGGTTGAAAGACCTGAGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAGCGGTCAGCAGCTGTAATGGCTGGGGGCGTCCTCTACGTTGCCACTGTGAAAAACTACCTGGGGACGGAGCCGATTATCTCCCGGGCTGTGGGTCGTGCTGAGGACTGGATTCGGACAGAGACCTTGCCATCCTGGCTTAACGCCCCAGCCTTTGTTGCAGCAGTGGCCTTGAGCCCAGCCGAGTGGGGGGATGAAGACGGAGACGATGAAATCTACTTCTTCTTTACGGAGATTTCCCGAGCTTTTGATTCATACGAACGCGTTAAGGTCCCGAGGGTGGCCCGTGTGTGTGCGGGGGACCTTGGGGGCCGGAAGACCCTCCAGCAGAGGTGGACGACCTTTCTGAAGGCTGACCTGCTGTGTCCAGGGCCTGAGCATGGCCGGGCCTCCAGTGTCCTGCAGGACATGGTCATTCTTCGACCTGAGCATGGATCGGGGACGCCCATCTTTTATGGCATCTTTTCCTCCCAGTGGGAAGGGGCTGCCATCTCTGCTGTCTGTTCCTTCCTACCACAAGACATTCGGACAGTGCTGAATGGTCCCTTCAGAGAGCTTAAACATGACTGCAACAGGGGACTGCCTGTCATGGACAATGATGTACCCCAGCCCAGACCTGGAGAGTGCATCACCAACAACATGAAGCTCCAGCAGTTTGGCTCGTCGCTCTTCCTGCCTGACCGTGTGCTCACCTTCATCCGGGACCACCCACTCATGGACAGGCCAGTGTTTCCAGCTGATGGCCACCCCCTGCTGGTCACTACAGATACAGCCTACCTCAGAGTCGTAGCCCACAGGGTGCCCAGCCTCTCAGGGAAAGAGTATGATGTGCTCTATCTGGGGACAGAGGATGGACACCTCCACCGAGCAGTGCAAATTGGAGCCCAGCTCAGTGTTCTTGAGGATCTGGCCTTATTCCCAGAGCCACAGCCAGTTGAGAATATGAAATTGTATCAAAGCTGGCTCCTGGTTGGCTCCCGTACTGAGGTGACACAAGTGAACACAACCAACTGTGGACGTCTACAGAGCTGCTCAGAGTGCGTTCTGGCCCGAGACCCTGTCTGTGCCTGGAGCGTTCGGCTAGCTGCGTGTGTGGCCCACACTGGAGAGCATGAAGGGCTGGTTCAAGACATAGAGTCAGCGGATGTCTCTTCTTTGTGTCCTAAAGAGCCTGGAGAACACCCAGTGGTGTTTGAAGTTCCTGTGGCTACAGCTGCACATGTGGTCTTGCCATGTTCCCCGAGCTCAGCCTGGGCATCCTGTGTGTGGCACCAGCCCAGCGGAGTGACTGCACTCACCCCCCGGCGGGATGGGCTAGAAGTGGTGATATCCCCAGGGGCCATGGGTGCTTATGCCTGTGAATGTCAGGAAGGTGGGGCAGCTCGTGTGGTAGCTGCTTACAGCTTGGTATGGGGCAGCCAGCGGGGCGCTCCAAGCCGGGCTCACATAGTGGGGGCTGGACTGGCAGGCTTCTTCCTGGGAGTTTTTGCAGCATCCCTGACTCTCCTCCTGATTGGTCGGCGTCAGCAGCGACAACGACAGAGGGAACTTTTGGCTAGAGACAAGGTGGGCTTGGACCTGGGGGTCCTACCATCTGGGACCACAAGCTACAGCCAGGACCCTCCCTCTCCCTCTCCTGAAGATGAGCGGCTGCCCCTGGCCCTGGCCAAGAGGAGCAGTGGCTTTGGTGGCTTTCCTCCACCCTTTCTGCTTGATCCTTGCCCGAGCCCAGCCCACATTCGGTTAACTGGGGCTCCTCTAGCCACGTGTGATGAAACATCCATCTAG

Related Sequences

bmy_12436T0 Protein

Length: 774 aa      View alignments
>bmy_12436T0
MPTSVARPRPCPGPSPASPLPLLLLLLLEVLSGPVCGRVSPSVPRISLPISEADSYLTRFTIPQTYNYSILLVDPASHMLYVGARDTIFALSLPFSGERPRRIDWMVPEAHRQNCRKKGKKEEECHNFVQILAIANASHLLICGTFAFDPKCGVIDVSSFQQVERPESGRGKCPFEPAQRSAAVMAGGVLYVATVKNYLGTEPIISRAVGRAEDWIRTETLPSWLNAPAFVAAVALSPAEWGDEDGDDEIYFFFTEISRAFDSYERVKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASSVLQDMVILRPEHGSGTPIFYGIFSSQWEGAAISAVCSFLPQDIRTVLNGPFRELKHDCNRGLPVMDNDVPQPRPGECITNNMKLQQFGSSLFLPDRVLTFIRDHPLMDRPVFPADGHPLLVTTDTAYLRVVAHRVPSLSGKEYDVLYLGTEDGHLHRAVQIGAQLSVLEDLALFPEPQPVENMKLYQSWLLVGSRTEVTQVNTTNCGRLQSCSECVLARDPVCAWSVRLAACVAHTGEHEGLVQDIESADVSSLCPKEPGEHPVVFEVPVATAAHVVLPCSPSSAWASCVWHQPSGVTALTPRRDGLEVVISPGAMGAYACECQEGGAARVVAAYSLVWGSQRGAPSRAHIVGAGLAGFFLGVFAASLTLLLIGRRQQRQRQRELLARDKVGLDLGVLPSGTTSYSQDPPSPSPEDERLPLALAKRSSGFGGFPPPFLLDPCPSPAHIRLTGAPLATCDETSI*