Part of scaffold_738 (SequenceType object (1))

For more information consult the page for scaffold_738 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HBP1ENSTTRG00000006826 (Bottlenosed dolphin)

Gene Details

HMG-box transcription factor 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006450, Bottlenosed dolphin)

Protein Percentage 93.35%
cDNA percentage 94.42%
Ka/Ks Ratio 0.40661 (Ka = 0.0448, Ks = 0.1102)

HBP1ENSBTAG00000005524 (Cow)

Gene Details

HMG box-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000007265, Cow)

Protein Percentage 91.18%
cDNA percentage 90.82%
Ka/Ks Ratio 0.22352 (Ka = 0.0571, Ks = 0.2553)

HBP1 (Minke Whale)

Gene Details

HMG-box transcription factor 1

External Links

Gene match (Identifier: BACU019226, Minke Whale)

Protein Percentage 95.06%
cDNA percentage 95.71%
Ka/Ks Ratio 0.47081 (Ka = 0.0355, Ks = 0.0754)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 1431 bp    Location:611861..579005   Strand:-
>bmy_12515
ATGGCGACGGGTTTGTCGGAGCACCATAACATGGTGTGGGAAGTGAAGACAAATCAGGTGCCTAATGCAGTACAGAAACTCCTGCTAGTAATGGACAAGAGAGCTTCAGGAATGAATGACTCATTGGAGTTGCTGCAGTGTAATGAAAATTTGCCATCCTCACCTGGATACAACTCTTGTGATGAGCACATGGAGCTTGATGATCTTCCTGAACTTCAGGCTGTTCAGAGTGATCCTGCTCAATCTGCCATATACCAGCTAAGTTCAGATGTGTCACATCAAGAATATCCAAGACCTTCTTGGAACCAGAATACCTCAGAAATATCAGAAAACACTTACCGTGAAAATGAGGTGGATTGGCTAACAGAATTAGCAAATATCGCCACCAGTCCACAAAGCCCACTTATGCAGTGCTCATTTTACAACAGATCATCTCCTGTACACATCATAGCTACTAGCAAAAGTTTACATTCCTATGCGCGCCCTCCACCGGTGTCCTCTTCKAAGGGTGAGCCAGCCTTCCCTCATCACCACTGGAAGGAGCAAACACCAGTCAGACACGAAAGGCATGGCAGTGCCCTGCTTCTCCTTCTGATGTCTTGTCTGTTTCGACTGGTGGCTTGTCTGCCCATGATGTTGAATGTTAATAAGGGCTATGGTTCTGATGGTCTAAAGTTGTTATCACATGAAGAAAGTGTATCATTTGGCGAGTCTGTACTGAAGTTGACTTTTGATCCTGGTACAGTAGAAGATGGTTTACTTACTGTAGAGTGTAAACTGGACCACCCTTTCTATGTTAAAAATAAAGGTTGGTCATCATTTTATCCAAGCTTGACTGTGGTACAGCATGGCATTCCATGTTGTGAAATTCATGTTGGTGATGTATGTCTACCTCCTGGACACCCCGATGCCATTAATTTTGATGATTCAGGTGTTTTTGATACATTTAAAAGCTATGACTTCACGCCTATGGATTCTTCTGCAGTCTATGTGTTAAGTAGTATGGCTCGTCAGCGTCGTGCTTCTTTGTCTTGTGGAGGACCTGGAGGTCAAGACTTTGAAAGATCTGGATTCAGTAAAAACTGTGGCTCCCCGGGATCCTCACAGCTCTCTTCCAATTCCTTGTACGCTAAAGCTGTCAAAACCCACAGCTCAGGGACTGTGAGTGCCACTTCTCCTAACAAGTGCAAAAGACCAATGAATGCCTTCATGCTTTTTGCCAAAAAATACAGAGTTGAATATACTCAGATGTATCCAGGGAAAGATAACAGAGCCATAAGTGTGATCCTTGGTGACAGGTGGAAGAAAATGAAGAATGAAGAGAGGAGAATGTATACATTAGAAGCAAAGGCTTTGGCTGAAGAACAAAAACGTTTAAATCCTGACTGTTGGAAAAGGAAAAGAACCAATTCAGTATGTTTCAACAAGTAG

Related Sequences

bmy_12515T0 SequenceType object (3)

Length: 477 aa      View alignments
>bmy_12515T0
MATGLSEHHNMVWEVKTNQVPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLPELQAVQSDPAQSAIYQLSSDVSHQEYPRPSWNQNTSEISENTYRENEVDWLTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKGEPAFPHHHWKEQTPVRHERHGSALLLLLMSCLFRLVACLPMMLNVNKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHVGDVCLPPGHPDAINFDDSGVFDTFKSYDFTPMDSSAVYVLSSMARQRRASLSCGGPGGQDFERSGFSKNCGSPGSSQLSSNSLYAKAVKTHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTNSVCFNK*