Part of scaffold_766 (Scaffold)

For more information consult the page for scaffold_766 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCDC88A ENSTTRG00000013958 (Bottlenosed dolphin)

Gene Details

coiled-coil domain containing 88A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013243, Bottlenosed dolphin)

Protein Percentage 78.6%
cDNA percentage 78.75%
Ka/Ks Ratio 0.34304 (Ka = 0.0209, Ks = 0.0611)

CCDC88A ENSBTAG00000017469 (Cow)

Gene Details

girdin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000033028, Cow)

Protein Percentage 96.37%
cDNA percentage 95.39%
Ka/Ks Ratio 0.16171 (Ka = 0.0224, Ks = 0.1383)

CCDC88A  (Minke Whale)

Gene Details

coiled-coil domain containing 88A

External Links

Gene match (Identifier: BACU013862, Minke Whale)

Protein Percentage 99.03%
cDNA percentage 99.15%
Ka/Ks Ratio 0.22104 (Ka = 0.0049, Ks = 0.0224)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5229 bp    Location:492490..437330   Strand:-
>bmy_12806
ATGGAAATAGAACTAAAAAGGCTGCAACAAGAGAACATGAATTTGCTTTCGGATGCTCGTTCTGCAAGAATGTATCGAGATGAATTAGATGCGCTTCGGGAGAAGGCTGTCAGAGTTGATAAGCTTGAAAGTGAAGTTAGCAGATACAAAGAGAGGCTACATGATATTGAATTTTATAAGGCAAGAGTTGAGGAATTAAAAGAAGACAATCAAGTTTTATTAGAAACAAAAACCATGTTGGAAGACCAATTAGAAGGAACTCGAGCTCGTTCTGATAAATTACATGAATTAGAAAAAGAAAATTTACAACTGAAGGCTAAACTGCATGATATGGAAATGGAGCGTGATATGGATAGAAAAAAGATTGAAGAATTAATGGAAGAAAATATGACTTTGGAAATGGCACAGAAACAAAGTATGGACGAATCATTACATCTTGGCTGGGAGCTGGAACAAATATCCAGAACTAGTGAACTTTCTGAAGCACCACAAAAATCCTTGGGCCATGAGGTAAATGAATTGACATCAAGTAGGTTGTTGAAGTTGGAGATGGAAAATCAGAGTTTGACAAAAACTGTAGAAGAGCTTCGGAGTACTATGGATTCTGCAGAAGGCACCACTTCCAAGATCCTGAAAATTGAAAAAGAAAATCAAAGACTAAGTAAGAAGGTTGAAATTCTTGAAAATGAAATTATTCAAGAAAAGCAAAGTCTTCAGAATTGTCAGAATTTAAGCAAGGATCTAATGAAGGAGAAAGCTCAGCTTGAAAAAACAATTGAAACACTTAGAGAAAATTCAGAGAGACAGATTAAAATATTGGAACAGGAAAATGAACATCTGAATCAAACTGTGTCCTCCTTAAGGCAGCGCTCCCAGATAAGTGCTGAAGCAAGGGTGAAAGACATTGAAAAAGAAAATAAAATTCTCCATGAATCTATCAAGGAAACCAGTAGCAAGCTAAGCAAGACTGAATTTGAAAAAAGGCAAATCAGAAAAGAGTTGGAACATTATAAGGAAAAAGGAGAACGAGCAGAAGAACTTGAGAATGAGTTACATCATCTTGAAAAAGAAAATGAATTGTTACAGAAAAAGATAACCAATTTAAAAATTACTTGTGAAAAAATTGAGGCCTTAGAACAAGAAAATTCAGAGCTAGAAAGAGAAAATAGGAAATTTAAAAAAACATTGGATAGCTTTAAAAACCTTAGTTTTCAGTTAGAATCCCTAGAGAAAGAGAATTCCCAGCTTGATGAGGAAAACTTAGAACTGCGAAGGAATGTAGAATCTTTGAAGTGTGCAAGCRTGAAAATGGCTCAGCTACAACTAGAAAACAAAGAACTGGAAAGTGAAAAAGAACAACTTAAGAAAGGTTTAGAGCTCATGAAAGCATCTTTCAAGAAAACAGAACGCTTAGAGGTTAGCTACCAGGGTTTAGATACAGAAAATCAAAGGCTACAGAAAGCTCTAGAAAACAGCAATAAAAAAATTCAGCAGTTGGAAAGTGAACTACAAGACTTAGAGATGGAAAATCAAACATTGCAAAAAAACCTAGAAGAGTTAAAAATATCTAGCAAAAGACTAGAACAGCTAGAAAAAGAAAACAAATCATTAGAACAAGAGACTTCTCAACTGGAAAAGGATAAGAAACAACTGGAGAAGGAAAATAAGAGACTCCGACAACAAGCAGAAATAAAAGATATCACATTAGAAGAAAATAATGTGAAAATTGGAAATTTGGAAAAAGAAAACAAAACCCTTTTCAAAGAGATTGGTATTTATAAAGAATCCTGCATTCGTCTGAAAGAATTAGAGAAAGAAAATAAGGAGCTTGTGAAAAGAGCAACTATTGATATAAAAACTTTAGTTACATTACGAGAGGATTTGGTGAGTGAAAAACTGAAGACTCAACAAATGAATAATGATCTTGAAAAATTAACTCATGAGCTTGAGAAGATAGGGTTAAATAAAGAGCGACTCTTACATGATGAGCAGAGTACTGATGACAGAATCCACTCTAAAGAAGTGAAAAAGAATTATGAAGCTCTCAAGCAGAGACAAGATGAGGAAAGGATGGTACAGAGCTCTCCTCCAATTTCCGGTGAAGATAACAAATGGGAGCGAGAAAGTCAAGAAACAACCAGAGAGCTTCTGAAAGTTAAAGACAGATTAATTGAAGTTGAAAGAAATAATGCTACACTGCAAGCAGAGAAGCAAGCATTGAAAACTCAACTGAAGCAACTTGAGACACAGAACAATAATTTGCAGGCTCAGATTCTTGCACTTCAGAGGCAGACAGTATCATTACAGGAGCAGAATACCACTCTTCAAACACAGAATGCCAAGCTTCAGGTTGAAAATTCCACTCTTAATTCCCAAAGTACCTCACTTATGAACCAGAATGCACAACTCCTAATCCAGCAGTCTTCCTTAGAAAATGAAAATGAATCTGTAATCAAAGAGCGAGAAGACCTGAAATCTCTCTATGATTCTCTGATCAAAGATCATGAAAAGCTGGAACTTCTGCATGAACGACAGGCTTCAGAGTATGAGTCTCTCATTGCTAAACATGGAACTCTAAAGTCTGCCCACAAAAATCTTGAGGTGGAACATAAAGACCTTGAAGATCGTTACAATCAGTTACTAAAACAGAAAGGACAATTGGAAGATTTGGAAAAAACACTGAAAGTAGAACAGGAAAAAATGCTGCTTAAAAACAAAAACCATGAAACTGTAGCTGCAGAATACAAGAAACTTTGTGGTGAAAATGATAGGTTGAATCATACATATAATCAGCTTTTAAAAGAGACTGAAGTTTTACAAACTGACCATAAAAACTTGAAAAGTCTTCTAAATAGTTCCAGACTGGAACAAACAAGATTAGAAGCTGAATTTTCAAAGTTAAAGGAACAATACCAACAACTGGACATCACATCCACCAAGCTAAATAACCAGTGTGAGTTGCTAAGCCAACTTAAAGGAAATTTAGAAGAGGAAAATCGACATCTACTAGATCAAATTCAGACATTAATGCTACAGAACAGAACACTATTGGAGCAGAATATGGAAAGCAAGGATCTTTTTCATGTTGAACAAAGACAGTACATTGATAAGTTAAATGAATTAAGACGACAAAAGGAGAAACTAGAAGAGAAAATTATGGATCAATACAAATTTTATGACCCATCTCCTCCTAGAAGGAGAGGCAACTGGATTACTCTAAAAATGAGAAAATTGATAAAGTCTAAGAAAGACATTAATCGGGAGCGTCAGAAATCACTAACATTAACACCAACCCGCTCAGACTCCAGTGAAGGATTTCTTCAACTCCCCCATCAAGATAGTCAAGATAGTTCTTCAGTAGGTTCAAACTCTTTAGAAGATGGCCAAACTCTGGGGACCAAGAAAAGCAGCATGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCGAAGGATAAAGACAAAATGAAGGCCTGCTACCGTCCCATGAATGACCTGGTGCAGTCCATGGTCCTAGCAGGAGGACAGTGGACAGGTAGTACTGAGAATTTGGAGGTTCCTGATGATATTTCAACGGGTAAAAGGAGAAAAGAATTGGGAGCTATGGCCTTCTCTACTACAGCCATCAACTTTTCAACTGTCAACTCTTCTACAGGCTTCAGATCCAAGCAGTTGGTTAATAATAAAGATACTACATCCTTTGAAGACGTAAGTCCACAAGGTATTAGTGATGATTCTAGTACGGGATCAAGAGTTCATGCTTCGAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAATAGCAATAATAATGCTTCACTCCATGAAGTCAAAGGTGCAGTTAATATCCAAAGCAGGCCACAAAGCCACAGCAGTGGAGAATTTAGCCTGCTTCATGAGCATGAGGCGTGGTCCAGCAGTGGTAGCAGTCCAATCCAATACTTGAAAAGACAGCCCAAATCAAGTCCAGTGCTCCAGCACAAAACACTAGAGAGTCGAGCACATCACAAGGTCAAAACTGGTTCCCCTGGAAGTGAAGTTGTTACTCTACAACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACAGATAAAGCCCTCAAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTCTGTCTCTTCTGACTTTTTGGGAAAAAACAAACCAGTTAGCTGTGGTCTGGCCAGGTCAGTAAGTGGAAAAACTGCAGGAGACTTCTATGATAGACGGACAACTAAGCCTGAACAATTTGTGAGACCTGGTCCTCAAAAGACTGAAGATACCTATTTCATTAGTTCTTCAGGAAAGCCTACACTRGGCACTCAAGGAAAGATAAAAGTAGTAAAAGAAACTTCTCTGTCACGACAATCAAAAGATAGTAATCCCTATGCCACTTTACCTCGTGCAAGCAGTGTGATCTCTACTGCTGAAGGAACTACTCGAAGGACAAGCATCCATGACTTTTTGACCAAGGACAGTAGACTACCTATGTCAGTTGATTCACCACCAGCTACTGCTGATAGCAGCATCACTGCAACATCTAGTGAGTACCGTTTACACCAGTGGTCCTCTCATCCACTTCACAGTCCAACTTATGCTGTAGGTTCTCAAGCACAAAATGATTTAGCTACAGACAAGCCCACGTCTCCATATGCCCAGGCCAGAAACTCAAGAACAGAAAGGTCACATTTTCTAAACCAAACTTTTGCCACTGTTAATATGTCTAATGATGCATTTGGAATATTAGCTAAAGATAGCATAGACTCATTTACTGTGGCTCATCCATCTCAGCCATTTTTATCCCTGAATACAGAATTAGTTAGTAACATAAGCGGGCTACCTCCCAGACCAGTCACCAGGCTAACTGACCAGGCTTCTGCTTCTTTGGATAAAGCTGCACAAAAAGATACTGAGCAGTTTTCTGATAATCAGAACTGCAGTAACAGTAACCCACAGTCTTCTGTAGTTAGCAATAATCTTATCACTCCTGCATGCCTCTATCCTGATGACACAGAAGCTGCATTGTTGGTTTCTGAGGATAATCAAACTGTTTGGTATGAATATGGTTGTATGTGGACAAAGTACAAGAAAGCAGAAATTCAAAAAGCAGGTCTAGGGAGCAACAAAGCTCCTAATTCTMTTACCCACTACATGACATGTGGGCCAAGTGCCAATTATTTTGATGCACTGCAAAAGAAATTCAGTTTA

Related Sequences

bmy_12806T0 Protein

Length: 1743 aa      View alignments
>bmy_12806T0
MEIELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELRSTMDSAEGTTSKILKIEKENQRLSKKVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKTEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKFKKTLDSFKNLSFQLESLEKENSQLDEENLELRRNVESLKCASXKMAQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDITLEENNVKIGNLEKENKTLFKEIGIYKESCIRLKELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRIHSKEVKKNYEALKQRQDEERMVQSSPPISGEDNKWERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENESVIKEREDLKSLYDSLIKDHEKLELLHERQASEYESLIAKHGTLKSAHKNLEVEHKDLEDRYNQLLKQKGQLEDLEKTLKVEQEKMLLKNKNHETVAAEYKKLCGENDRLNHTYNQLLKETEVLQTDHKNLKSLLNSSRLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNLEEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQYKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPHQDSQDSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDKDKMKACYRPMNDLVQSMVLAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTTAINFSTVNSSTGFRSKQLVNNKDTTSFEDVSPQGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKGAVNIQSRPQSHSSGEFSLLHEHEAWSSSGSSPIQYLKRQPKSSPVLQHKTLESRAHHKVKTGSPGSEVVTLQQFLEESNKLTSIQIKPSSQENLLDEVMKSLSVSSDFLGKNKPVSCGLARSVSGKTAGDFYDRRTTKPEQFVRPGPQKTEDTYFISSSGKPTLGTQGKIKVVKETSLSRQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLTKDSRLPMSVDSPPATADSSITATSSEYRLHQWSSHPLHSPTYAVGSQAQNDLATDKPTSPYAQARNSRTERSHFLNQTFATVNMSNDAFGILAKDSIDSFTVAHPSQPFLSLNTELVSNISGLPPRPVTRLTDQASASLDKAAQKDTEQFSDNQNCSNSNPQSSVVSNNLITPACLYPDDTEAALLVSEDNQTVWYEYGCMWTKYKKAEIQKAGLGSNKAPNSJTHYMTCGPSANYFDALQKKFSL