Sequence detailsbmy_12817 (Coding sequence)

Part of scaffold_777 (SequenceType object (1))

For more information consult the page for scaffold_777 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL4A6ENSTTRG00000010030 (Bottlenosed dolphin)

Gene Details

collagen, type IV, alpha 6

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009514, Bottlenosed dolphin)

Protein Percentage 86.46%
cDNA percentage 88.12%
Ka/Ks Ratio 0.78854 (Ka = 0.0749, Ks = 0.095)

COL4A6ENSBTAG00000013760 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000018292, Cow)

Protein Percentage 89.0%
cDNA percentage 89.91%
Ka/Ks Ratio 0.42372 (Ka = 0.0761, Ks = 0.1796)

COL4A6 (Minke Whale)

Gene Details

collagen, type IV, alpha 6

External Links

Gene match (Identifier: BACU017187, Minke Whale)

Protein Percentage 96.69%
cDNA percentage 96.65%
Ka/Ks Ratio 0.3979 (Ka = 0.0218, Ks = 0.0547)

Additional orthologs identified in other species via the OPTIC pipeline.

COL4A6 (Human)   Col4a6 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4419 bp    Location:78457..360923   Strand:+
Raw sequence 
>bmy_12817
ATGCACCCTGGGTTGTGGCTTCTCCTGGTTACGTTGTGCCTGACCGAGGAACTGGCAGGAGCGGGAGAGAAGAAGCCCTATGGAAAGCCATGTGGAGGCCAAGACTGCATTGGGGGCTGTAAATGCTCTCCTGAGAAAGGAGCCCGAGGGCGACCAGGACCAATTGGAATTCAAGGTCCAGTGGGTCCTCAAGGATTTCCTGGCCCTAGTGGTTTATCAGGGTTGAAAGGAGAAAGGGGCTCCCCAGGACCTCTGGGACCGTATGGACCAAAAGGAGATAAGCTTGTCGGAGTAGCTGAGAGTCCTGTGGCTGACTTGATCCCTTCTTTCTCTTTGAACAGGGCCACCCTGGACAGCCAGGGCCCAGAGGCCCACCTGGCCTGGATGGCTGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTATCCCGGCCTTCTCGGACCACCCGTATGCTGCCAGATCTTTGTACATTATTTCAAATGGCTTTGCTTGCCTCCAGGGGCTTCCTGGTCAAAAAGGCTCTAAAGGTGAACCTATCCTTGCCCAAGGTAGTTTCAAAGGAATGAAGGGGGAGCCTGGGCTGCCCGGACTGGATGGAATCACTGGTCCTCCAGGCCCCCCTGGTTTCCCTGGTCCTGATGGGAATATGGGGTTAGGTTTCCAAGGAGAGAAAGGAGTCAAGGGGGATGTTGGCCTGCCTGGCCCTGCAGGACCCCCACCATCTACTGGGGAACTGGAATTCATGGGATTTCCCAAAGGGAAGAAAGGATCCAAGGGTGAACCAGGGCTTCAGGGCTTCCCAGGAATAAGTGGTCCTCCAGGTCTCCCGGGATTTGGAATTGCTGGAGAAAAAGGAGAAAAGGGAATCCCTGGTTTGCCGGGACCTAGGGGTCCCGTGGGTTTAGAAGGAGTCCAAGGCCCTCCAGGGAGTCAGGGCAAGAAGGGGTCTTCAGGTTTCCCCGGGCTTAATGGATTCCCAGGAATTAAGGGTGAAAAGGGTGACATTGGCCTGCCAGGCCCAGATGTTTTCATCGATACAGATGGTGCTGTGATCTCAGGTTATCCTGGAGACCCCGGTATGCCAGGCCTCCCAGGCCTTAAAGGAGATGAAGGCATCCAGGGCCTGCCTGGCCCTCCTGGTGCTCCTGGATTACCAGCTTTGCCAGGTGGCCCCGGTGCTCTAGGGCTCCAGGGAGTTCCAGGCCTGAAGGGGGACCAAGGAAACCCCGGCCGCACCACAAYTGGGGCAGCTGGCCTCCCTGGCAGAGATGGTTTGCCAGGCCTACCAGGCCTACCAGGCCCACCCGGTCCAGCATTTGAGACGGGAACTCTACAGAGCACAGAGCCAGGGTTGCCTGGTCTCCGAGGAGAACGAGGTCCAAAAGGAAACCCAGGCCTCAAAGGAATCAAAGGGGACTCAGGTTTTTGTGCTTGTGATGGTGGTGTCCCAAACATTGGACCACCTGGGGAGCCAGGCCTGCCTGGGCCACCAGGTCTCCTGGGCCTTCCGGGCCTGAAAGGAACGAGAGGAGATCCAGGCTCTGGGGGTGCACAGGGCCYGTCAGGGGATCCAGGTGTATTTGGGCCTCGAGGTCTGGCAGGCCCCAAAGGAAAGAAAGGGGAAGCGACWCTCAGTACGGGATCAGGGATGCCAGGAGATCAGGGTGATCCTGGTCCCCAGGGGCTCCCTGGTGAGACAGGAGCCCCAGGCAGGGACGGAGTACCAGGTTTACCAGGCCTGCCAGGCTTTCAGGGTGATGGTGGACAGGGCTTCCCAGGTGAAAAGGGGTTACCAGGACTTCCTGGTGAAAAAGGCCGCACTGGTCCAATTGGCCCCCCAGGAATTGGGCTACCAGGATCTTCTGGACCTCGTGGGCTTCCTGGAGATAAAGGAGTAGATGGATTCCCAGGGCAACCAGGCCCCCCCGGGATTCCAGGTGACTGCTGCTGCAGGGAGAAGGTTGGGCAAGGAGACTTAGACACAGAGGGAGGTGAGAGGTATCACCTTGCCTTGTATTATTCCTGGGCCATACGGTCCATCAGGATTCCCAGGAGCTCCCGGATTCCCAGGTATGGAATGAGGCCAGAAAAAGCCACTGAGCACACTTGCCCTAACGGGGCCCGTGGCCTCCCTGGGACTCCAGGCCAGCCTGGATTGCGTGGAAATAAAGGAGAGCCCGGAAGTCCAGGATTGGTTCACCTCCCTGAATTGCCAGGATTTCCTGGACCTCGTGGAGAGAAGGGCTTGCCTGGGTTTCCTGGGCTCCCTGGAAAAGATGGCTTGCCTGGGAAAGTTGGCAGTCCCGGCTTACCAGGTCCCAAGGGAGCCCCTGGTGACATCATTGGTGCTGAAAACGGTGCTCCTGGGGAGCAAGGCCTACAGGGACTGCCAGGGGACAGAGGATTTCCTGGAGACTCTGGCCTTACAGGACCCAAGGGTTTGCTTGGGAAGTCGGGCCTGCTCGGCCCCAAAGGTGAGCGGGGCAGCCCTGGAATACCAGGCCGCGCAGGACAGCTAGGCCCCCGGGGGTCTGGTGGTCTATTCGGCATCAAGGGCAAACCCGGGCTCCCAGGAGCACCAGGCTTTCCAGGCACTGCAGGACATCCTGGAAAGAAAGGTCCAAGAGGCGATATAGGTCCCCCTGCATCAGCTGGAAAGAGAGGCCTGCCTGGGCTGAAAGGCCTTCCGGGATCTCCAGGGCTAATTGGCTTCCTGGGGAACTCCGGCTTGCCAGGGGCCACTGGACTGCCAGGCCTGCCAGGTCCGAAGGGAGATCAAGGCCAGACACTTGGAATTTCTGGTAGCCCAGGACCCAAGGGACAACCTGGGGAGCCTGGTTTCAAAGGTGTGAAAGGAAAAGATGGACCAGTTGGTGATGTGGGTTTCCCAGGAAACAAAGGTGAAGATGGGAAAGTTGGTATTTCTGGAGATGTTGGCCTTCCTGCCTCCCCAGGTTTCCCAGGTCTCCAGGGCCCCGCTGGTCTCCCTGGTGCCCCAGGCCTCTCCTTGCCCTCAGTCATAGCAGGACAGCCTGGCGACCCCGGGCGACCAGGCCTAGATGGAGAACGAGGCCGCCCAGGCCCCCCGGGGCCCCCAGGCCCCCCTGGGCCATCCTCGGATCAAGGCGACCCGGGAGACCCTGGCTTCCCTGGAATTCCTGGCCCTCAAGGGCCCAAGGGAGACCAAGGAATTCCAGGTTTCTCTGGCCTCCCTGGAGAGCTAGGACTGAAAGGCATGAGAGGTGAGCCTGGCTTCATGGGGACTCCAGGCAAAGTTGGACCACCTGGAGACCCAGGACTTCCCGGGATGAAGGGGAAGGCAGGGCCAAGAGGCTTATCCGGCCCCCGAGGTGCTCCTGGACAAACACCAATTGCAGAAGACATCCAGGCTCCTCCTGGACCCATGGGTCTAACAGGCATCGATGGCATCCCTGGCCTCATGGGGGACCCTGGGGTCCAAGGCCCTGGAGGCCTACAAGGCTTCAAAGGTTTACCTGGCATCCCTGGCAAAGATGGCCCCAATGGACTCCCTGGCCCACCTGGGGCTCTTGGTGACCCTGGTCGCCCTGGACTGCAAGGCCCTCCAGGATTTGAAGGTCTGGCAATGTCGGCACTAGGGGGCAGAGGGCTTCTCAGGTCCTTGGTTATCTCTGCTCTCTCCATCTCAGGAGCTCCAGGGAAGCCGGGCCCCTTCGGGAGGGCTGGAGTGCCTGGGCAGAGCGTGAGAGTGGGCTACACCTTGGTGAAGCACAGCCAGTCGGAACAGGTGCCCCTGTGCCCCGTCGGGATGAGCCAGCTGTGGGTGGGTTATAGCCTGCTGTTCGTGGAGGGGCAGGAGAAAGCCCACAACCAGGACCTAGGGTTTGCTGGCTCCTGCCTGCCCCGCTTCAGCACCATGCCCTTCATCTACTGCAACATCAACGAAGTGTGCCACTATGCCCGGCGCAACGATAAATCCTACTGGCTCTCCACCACCGCGCCCATCCCCATGATGCCCGTCGGCCAGACGCAGATTCCCCAGTACATCAGCCGCTGCTCTGTGTGTGAGGCGCCCTCACAAGCCATTGCTGTGCACAGCCAGGACATCACCATCCCGCAGTGCCCCCTGGGCTGGCGCAGCCTCTGGATTGGGTACTCCTTCCTCATGCACACGGCCGCCGGCGCTGAGGGCGGGGGCCAGTCCCTGGTCTCCCCCGGCTCCTGCCTAGAGGATTTCCGAGCCACTCCTTTCATCGAGTGCAGTGGTGCCCGGGGCACCTGCCACTACTTTGCCAACAAGTACAGCTTCTGGCTGACGACGGTGGAAGAGAGGCAGCAGTTTGGGGAGGAGCCCGTATCTGAGACGCTGAAAGCCGGGCAGCTCCACACCCGGGTCAGCCGCTGCCAGGTGTGTATGAAAAGCGTGTAG

Related Sequences

bmy_12817T0 SequenceType object (3)

Length: 1473 aa      View alignments
>bmy_12817T0
MHPGLWLLLVTLCLTEELAGAGEKKPYGKPCGGQDCIGGCKCSPEKGARGRPGPIGIQGPVGPQGFPGPSGLSGLKGERGSPGPLGPYGPKGDKLVGVAESPVADLIPSFSLNRATLDSQGPEAHLAWMAVMELKELLDFQALMAIPAFSDHPYAARSLYIISNGFACLQGLPGQKGSKGEPILAQGSFKGMKGEPGLPGLDGITGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGLQGFPGISGPPGLPGFGIAGEKGEKGIPGLPGPRGPVGLEGVQGPPGSQGKKGSSGFPGLNGFPGIKGEKGDIGLPGPDVFIDTDGAVISGYPGDPGMPGLPGLKGDEGIQGLPGPPGAPGLPALPGGPGALGLQGVPGLKGDQGNPGRTTXGAAGLPGRDGLPGLPGLPGPPGPAFETGTLQSTEPGLPGLRGERGPKGNPGLKGIKGDSGFCACDGGVPNIGPPGEPGLPGPPGLLGLPGLKGTRGDPGSGGAQGXSGDPGVFGPRGLAGPKGKKGEATLSTGSGMPGDQGDPGPQGLPGETGAPGRDGVPGLPGLPGFQGDGGQGFPGEKGLPGLPGEKGRTGPIGPPGIGLPGSSGPRGLPGDKGVDGFPGQPGPPGIPGDCCCREKVGQGDLDTEGGERYHLALYYSWAIRSIRIPRSSRIPRYGMRPEKATEHTCPNGARGLPGTPGQPGLRGNKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGLPGPKGAPGDIIGAENGAPGEQGLQGLPGDRGFPGDSGLTGPKGLLGKSGLLGPKGERGSPGIPGRAGQLGPRGSGGLFGIKGKPGLPGAPGFPGTAGHPGKKGPRGDIGPPASAGKRGLPGLKGLPGSPGLIGFLGNSGLPGATGLPGLPGPKGDQGQTLGISGSPGPKGQPGEPGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDVGLPASPGFPGLQGPAGLPGAPGLSLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDPGFPGIPGPQGPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSGPRGAPGQTPIAEDIQAPPGPMGLTGIDGIPGLMGDPGVQGPGGLQGFKGLPGIPGKDGPNGLPGPPGALGDPGRPGLQGPPGFEGLAMSALGGRGLLRSLVISALSISGAPGKPGPFGRAGVPGQSVRVGYTLVKHSQSEQVPLCPVGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGEEPVSETLKAGQLHTRVSRCQVCMKSV*