Sequence detailsbmy_12821 (Coding sequence)

Part of scaffold_777 (SequenceType object (1))

For more information consult the page for scaffold_777 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VSIG1ENSTTRG00000010025 (Bottlenosed dolphin)

Gene Details

V-set and immunoglobulin domain containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009507, Bottlenosed dolphin)

Protein Percentage 78.57%
cDNA percentage 82.14%
Ka/Ks Ratio 1.14076 (Ka = 0.0519, Ks = 0.0455)

BT.28172ENSBTAG00000007859 (Cow)

Gene Details

V-set and immunoglobulin domain-containing protein 1 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000010335, Cow)

Protein Percentage 81.42%
cDNA percentage 88.62%
Ka/Ks Ratio 0.5745 (Ka = 0.1056, Ks = 0.1838)

VSIG1 (Minke Whale)

Gene Details

V-set and immunoglobulin domain containing 1

External Links

Gene match (Identifier: BACU017190, Minke Whale)

Protein Percentage 95.1%
cDNA percentage 97.82%
Ka/Ks Ratio 1.88193 (Ka = 0.026, Ks = 0.0138)

Additional orthologs identified in other species via the OPTIC pipeline.

VSIG1 (Human)   Vsig1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1104 bp    Location:463337..443754   Strand:-
Raw sequence 
>bmy_12821
ATGATTATCTTTTCAGGTCCAGTTAGTGGAGTGCAAGTGACCATCCCAGACAATTTTGTGAATGTGACTGTTGGATCTGATGTCACTCTCATCTGCACCTACACCACCACTGTGGCCTCACTGGACAAGCTTTCCATCCAGTGGACATTCTTCCATAAGGAGTCACAGCCAGTTTCTATTTACTATTCTGAAGGTGGACGAGCTACAGCCATCGGGCAATTTAAAGATCGCATTGTAGGGTCCAATGCTCCAGGTAACGCATCCATCACTATTTCGCATATGCAACCAGCAGATAGTGGCATCTACGTCTGTGATGTTAACAACCCCCCTGACTTTTTCGGCAAAAATCAAGGCACCCTCAACGTCAGTGTGTTAGTCAAACCTTCCAAGCCCTTTTGCAGCATCCAAGGAATACCAGAACCTGGCTATCCTATATCTCTTACTTGCCTCTCTGTGCTTGGAACACCTTCCCCGGTGTACTACTGGTATAAACTTGAAGGAAGAGACATCGTCCCAGTGAAAGAAAGCTTCAACCCAGCCACCGGGATTTTGTTTATTGGAAATCTGACCAATTTTGTACAAGGTTATTACCAGTGCACCGCTATCAACAACCTTGGCAATAGTTCCTGTGAAATTGACCTAACTTCTTCACATCCAGAAGTTGGAATCATTGTCGGGGCCTTGGTGGGTACCCTAGTAGGTGCTGCCATTATCTTCTCTGTGGTGTGCTTCGCAAGGAACAAGGCAAAGGCGAAGCGGAAGGAAAGGAAGAGAAATTCTAAATCCACCACAGAACTCGAACTAATGACAAAGATAAACCAAAGTACAGAGTGTGAGACAATACCAGATGAAGATATCATCCAAATAGAAGCAACTCTGCCACCTTCCATCCATGAGGCTGAGCCTAATACCACCCTGGGGCCAGATCACAAGCCTATCCCCAAGCCTGAGCCTGCCTTGCAGCCTGCGCTGGAGCCGGCCTCAGGGCCTGAGCTTGCCCGGGCGCCTGAGCTTGAGATCAAGCTGGAGCCACAGCAGGAACCAGAGCCCTCGATTGTAGTTGAGCCCTCCTGTGACGAGGGAAAGGGGGTGATTAAGACATAG

Related Sequences

bmy_12821T0 SequenceType object (3)

Length: 368 aa      View alignments
>bmy_12821T0
MIIFSGPVSGVQVTIPDNFVNVTVGSDVTLICTYTTTVASLDKLSIQWTFFHKESQPVSIYYSEGGRATAIGQFKDRIVGSNAPGNASITISHMQPADSGIYVCDVNNPPDFFGKNQGTLNVSVLVKPSKPFCSIQGIPEPGYPISLTCLSVLGTPSPVYYWYKLEGRDIVPVKESFNPATGILFIGNLTNFVQGYYQCTAINNLGNSSCEIDLTSSHPEVGIIVGALVGTLVGAAIIFSVVCFARNKAKAKRKERKRNSKSTTELELMTKINQSTECETIPDEDIIQIEATLPPSIHEAEPNTTLGPDHKPIPKPEPALQPALEPASGPELARAPELEIKLEPQQEPEPSIVVEPSCDEGKGVIKT*