Sequence detailsbmy_12959 (Coding sequence)

Part of scaffold_830 (SequenceType object (1))

For more information consult the page for scaffold_830 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RNF20ENSTTRG00000000662 (Bottlenosed dolphin)

Gene Details

ring finger protein 20, E3 ubiquitin protein ligase

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000622, Bottlenosed dolphin)

Protein Percentage 99.69%
cDNA percentage 98.76%
Ka/Ks Ratio 0.03681 (Ka = 0.0014, Ks = 0.0387)

RNF20ENSBTAG00000009516 (Cow)

Gene Details

E3 ubiquitin-protein ligase BRE1A

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000012521, Cow)

Protein Percentage 98.14%
cDNA percentage 95.28%
Ka/Ks Ratio 0.05509 (Ka = 0.0088, Ks = 0.1604)

RNF20 (Minke Whale)

Gene Details

ring finger protein 20, E3 ubiquitin protein ligase

External Links

Gene match (Identifier: BACU017592, Minke Whale)

Protein Percentage 97.01%
cDNA percentage 97.21%
Ka/Ks Ratio 0.37681 (Ka = 0.0202, Ks = 0.0536)

Additional orthologs identified in other species via the OPTIC pipeline.

RNF20 (Human)   Rnf20 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3075 bp    Location:603703..666104   Strand:+
Raw sequence 
>bmy_12959
ATGTTCAATCCGAATTCAGGAAAGGACACCAGGGATGCCCGAGTGGGAAAAGGTCTTAAGGTAGGAGAAACCATGAAAGCTGTCATGGAACATGGAAAAGAGCTATCATCTTGTGCCAAGATGTCAGGAATTGGAAATAAAAGAGCAGCCGGAGAGCCTGGCACATCTGTGCCTCCGGAGAAGAAGACAGCTGTTGAAGATTCAGGGACCACGGTGGAAACAATTAAGCTCGGGAGTGTCTCTTCAACGATTAATAAGACTGGTTTCCTGGGGCAGGAGGAGTTAGACATTCGAACACTGCAAGCCAAAAATCGCAAACTGGCAGAAATGCTGGATCAACGGCAAGCCATTGAAGATGAACTCCGTGAGCACATTGAAAAACTGGAACGAAGACAGGCCACTGATGATGCCTCACTATTGATCGTCAACCGGTACTGGAGTCAGTTTGATGAAAACATCCGTATCATCCTTAAACGTTATGATCTGGAGCAGGGTTTGGGAGACCTACTCACAGAAAGAAAAGCCCTTGTTGTGCCTGAGCCGGAACCAGACTCTGATAGCAATCAGGAACGGAAAGATGACCGAGAGAGAGGGGAAGGGCAAGAGCCAGCTTTCTCTTTCCTTGCTACTTTGGCCAGCAGTTCCAGTGAAGAGATGGAATCTCAGCTGCAGGAGCGCGTGGAGTCCTCCCGCCGAGCTGTGTCCCAGATTGTGACCGTCTACGATAAACTGCAAGAAAAAGTGGAGCTCTTATCGCGGAAGCTGAACAGTGGAGATAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAATTCCTTCCTTGCACAAGAGGACATGAGGCTACAAGAATTGACAGACCTCCTTCAGGAGAAGCATTGCACCATGTCTCAGGAGTTCKCCAAGTTGCAGAGTAAAGTGGAGACAGCTGAGTCACGAGTATCTGTCCTGGAGTCCATGATTGATGACCTGCAGTGGGATATTGACAAAATTCGRAAGAGGGAACAGCGACTCAATCGACACTTAGTAGAAGTCCTAGAACGGGCAAGTGCTGTTTTATGCATAGTGAATTCAAAAGGTTATAAAGTATACGGTGCAGGGAGCAGTCTCTATGGCGGCACAATCACTATCAATGCCCGGAAGTTTGAGGAAATGAACGCAGAGCTCGAGGAGAACAAAGAGTTGGCTCAGAACCGTCACTGTGAGCTGGAGAAACTTCGGCAAGACTTTGAGGAGGTCACTACACAAAATGAAAAGCTGAAGGTGGAATTGCGGAGTGCTGTGGAGGAAGTGGTCAAGGAGACTCCAGAATATCGCTGCATGCAGTCACAGTTCTCTGTCCTGTACAACGAGAGCCTGCAGTTGAAAGCCCACTTGGATGAGGCTCGGACCCTGCTTCATGGCACCAGGGGGACMCACCAACGCCAAGTTGAGCTCATTGAGCGAGATGAGGTTAGTCTTCATAAGAAGCTGAGGACCGAAGTGATCCAGCTAGAAGATACACTGGCCCAGGTCCGCAAGGAGTATGAAATGCTGAGGATAGAATTTGAGCAGACCCTTGCAGCCAACGAACAAGCAGGCCCCATAAACCGGGAGATGCGCCACCTCATCAGTAGCCTCCAGAATCACAATCACCAGCTGAAAGGGGAGGTCCTAAGGTATAAGCGGAAACTGAGAGAAGCCCAGTCTGACCTGAACAAGACACGGCTGCGCAGTGGGAGTGCCCTCCTGCAGTCTCAGTCCAGTACCGAGGACCCTAAGGACGAGCCTGCAGAGCTAAAACAAGATCCTGAGGACTTGTCTGCCCAGTCCACCGCATCGAAGGCATCTCAGGAGGAAGTCAACGAAATTAAGTCCAAACGCGATGAGGAAGAGCGAGAACGAGAAAGGAGGGAGAAAGAGAGGGAGCGAGAAAGAGAGCGGGAGAAGGAAAAGGAGAGAGAACGAGAGAAACAGAAACTAAAAGAGTCAGAAAAAGAGAGAGATTCTGCTAAAGATAAAGAGAAAGGGAAACATGATGATGGAAGGAAAAAGGAAGCAGAAATTATCAAACAATTGAAGATTGAACTCAAGAAGGCACAGGAGAGCCAAAAGGAGATGAAACTATTGCTAGATATGTACCGCTCTGCCCCAAAGGAACAGAGAGACAAGGTTCAGCTAATGGCAGCTGAGAAGAAGTCTAAGGGAGAGTTGGAAGATTTAAGGCAAAGACTCAAAGATCTGGAAGATAAGGAGAAAAAAGAGAACAAGAAAATGGCTGATGAAGATGCCCTGAGGAAGATCCGGGCAGTAGAGGAGCAGATAGAATACCTGCAGAAGAAGCTGGCCATGGCCAAGCAGGAGGAAGAAGCTCTCCTCTCTGAGATGGACGTCACAGGCCAGGCCTTTGAAGACATGCAGGAGCAAAATATCCGTTTGATGCAGCAGTTGAGGGAGAAGGATGATGCAAATTTCAAGCTCATGTCAGAACGTATCAAGTCCAATCAGATCCATAAGCTGCTGAAAGAAGAGAAGGAGGAGCTGGCAGACCAGGTTGATGCCCAGTTACAGGTAGTGAGGAAACTGGAAGAGAAGGAGCATCTGTTACAAAGCAACATTGGCACAGGGGAGAAGGAGCTGGGTCTTAGGACCCAAGCCTTAGAGATGAATAAACGCAAGGCAATGGAGGCAGCCCAGCTTGCAGATGACCTCAAAGCACAGTTGGAGTTGGCTCAGAAGAAGCTACATGATTTTCAGGATGAGATTGTGGAGAACAGTGTCACCAAAGAAAAAGATATGTTCAATTTCAAACGGGCCCAGGAGGACATCTCTAGACTTCGAAGGAAGCTGGAGACCACAAAGAAACCAGACAATGTACCCAAATGTGATGAGATTCTGATGGAGGAGATTAAGGATTACAAGGCACGCCTGACCTGTCCGTGTTGCAACATGCGTAAAAAGGATGCTGTACTTACCAAGTGTTTTCACGTTTTCTGCTTTGAGTGTGTGAAGACCCGCTATGACACCCGCCAGCGCAAATGTCCCAAGTGTAATGCTGCTTTTGGTGCCAATGATTTCCATCGCATCTACATTGGTTGA

Related Sequences

bmy_12959T0 SequenceType object (3)

Length: 1025 aa      View alignments
>bmy_12959T0
MFNPNSGKDTRDARVGKGLKVGETMKAVMEHGKELSSCAKMSGIGNKRAAGEPGTSVPPEKKTAVEDSGTTVETIKLGSVSSTINKTGFLGQEELDIRTLQAKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIVNRYWSQFDENIRIILKRYDLEQGLGDLLTERKALVVPEPEPDSDSNQERKDDRERGEGQEPAFSFLATLASSSSEEMESQLQERVESSRRAVSQIVTVYDKLQEKVELLSRKLNSGDNLIVEEAVQELNSFLAQEDMRLQELTDLLQEKHCTMSQEFXKLQSKVETAESRVSVLESMIDDLQWDIDKIRKREQRLNRHLVEVLERASAVLCIVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRHCELEKLRQDFEEVTTQNEKLKVELRSAVEEVVKETPEYRCMQSQFSVLYNESLQLKAHLDEARTLLHGTRGTHQRQVELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINREMRHLISSLQNHNHQLKGEVLRYKRKLREAQSDLNKTRLRSGSALLQSQSSTEDPKDEPAELKQDPEDLSAQSTASKASQEEVNEIKSKRDEEERERERREKEREREREREKEKEREREKQKLKESEKERDSAKDKEKGKHDDGRKKEAEIIKQLKIELKKAQESQKEMKLLLDMYRSAPKEQRDKVQLMAAEKKSKGELEDLRQRLKDLEDKEKKENKKMADEDALRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVDAQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG*