Sequence details bmy_12977 (Coding sequence)

Part of scaffold_813 (Scaffold)

For more information consult the page for scaffold_813 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDPN ENSTTRG00000001226 (Bottlenosed dolphin)

Gene Details

podoplanin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001154, Bottlenosed dolphin)

Protein Percentage 84.62%
cDNA percentage 92.05%
Ka/Ks Ratio 1.52384 (Ka = 0.097, Ks = 0.0637)

BOVAGGRUS ENSBTAG00000001788 (Cow)

Gene Details

podoplanin precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002341, Cow)

Protein Percentage 60.0%
cDNA percentage 74.67%
Ka/Ks Ratio 1.13033 (Ka = 0.3376, Ks = 0.2986)

PDPN  (Minke Whale)

Gene Details

podoplanin

External Links

Gene match (Identifier: BACU005661, Minke Whale)

Protein Percentage 93.08%
cDNA percentage 96.92%
Ka/Ks Ratio 1.16864 (Ka = 0.0332, Ks = 0.0284)

Additional orthologs identified in other species via the OPTIC pipeline.

PDPN (Human)   Pdpn (Mouse)  

Genome Location

Sequence Coding sequence

Length: 396 bp    Location:591422..582373   Strand:-
Raw sequence 
>bmy_12977
ATGACTACAGGTGTGGAAAATGACAAGGCGACCCTGCGTGTGGAAGATTACACAGTGACCCCAGGTGCCGGGGGAGAGCCCCATGAGTCTGCTGGCTTGACAGCGCTGATGCCGACAAGAACAAAGAGTATAACAGACAGTCACAAAGAGGACCTGCCAACTGCGGAAAGCACAATCCACTCCCAAGGACAAAGCCAGAGCACCACAACCCCGAATGTGGCAACTAGTCAGTCCCCGGGGAAAACAGATGGAGAAAAACCAACAACAGTTGAGAAAGGTGGCTTGTCAACAGTGACCCTGGTTGGAATCATAGTTGGGGTCTTACTAGCCATTGGATTCATTGGTGGAATCATCACTGTGTTTGTTCGAAAAATGTCGGGAAGGTACTCGCCCTAA

Related Sequences

bmy_12977T0 Protein

Length: 132 aa      View alignments
>bmy_12977T0
MTTGVENDKATLRVEDYTVTPGAGGEPHESAGLTALMPTRTKSITDSHKEDLPTAESTIHSQGQSQSTTTPNVATSQSPGKTDGEKPTTVEKGGLSTVTLVGIIVGVLLAIGFIGGIITVFVRKMSGRYSP*