Sequence detailsbmy_13019 (Coding sequence)

Part of scaffold_828 (SequenceType object (1))

For more information consult the page for scaffold_828 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYNCRIPENSTTRG00000004471 (Bottlenosed dolphin)

Gene Details

synaptotagmin binding, cytoplasmic RNA interacting protein

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004213, Bottlenosed dolphin)

Protein Percentage 84.54%
cDNA percentage 84.65%
Ka/Ks Ratio 0.31768 (Ka = 0.0017, Ks = 0.0055)

SYNCRIPENSBTAG00000006672 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008774, Cow)

Protein Percentage 98.23%
cDNA percentage 97.7%
Ka/Ks Ratio 0.13487 (Ka = 0.01, Ks = 0.0742)

SYNCRIP (Minke Whale)

Gene Details

synaptotagmin binding, cytoplasmic RNA interacting protein

External Links

Gene match (Identifier: BACU016911, Minke Whale)

Protein Percentage 99.61%
cDNA percentage 99.74%
Ka/Ks Ratio 0.268 (Ka = 0.0017, Ks = 0.0063)

Additional orthologs identified in other species via the OPTIC pipeline.

SYNCRIP (Human)   Syncrip (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2715 bp    Location:502963..471588   Strand:-
Raw sequence 
>bmy_13019
TTATTAGGGATTCCCCATGTTTCAGTAATAGTAGTAATTCTTGGCATCAAGCCTGGAATAAGAAGTTCTGCAGGTACTAATGAAAATAATCTGGCATACGAAGTGTTTAAGCACTTTGAAGAGTATTCATCTAACTTTTTGTTTAGGGAACCACATCCCAAGGCGGGAGCCGCTCCTCGCTCCACTGGAGCCAGCCGGTTCCCCCTCAAAAGCAGCCGGGGTTTCCTCGTTCGAGCCCCGAGCGCCCCTCCCTCCGCCCAAGGTTCCCGTGGAAAGGAAGCCACGCGGGCGCGGGGCCCCGGAGTTCCCACTGTCCGGCCGGGGAGACCCAGTCTCCCAGGAGGGACTCCCGCACTCGAGTCCCGCCGGCCAGGTGGACCAAAGGTCCGCGGGCTCCGCGCCGCTCCCCTCCCCCGCCGCCCCATTGTCTGCCTCGCCCCGCCCCGGGGGACACGTGCGCCTGCAGCTTCCCGAGCGAGGAGAGCGCGGGGCGGCGGCGGCGTGGACACCGCCTGGAACGGCTACGCGGCCGCGGCGTCGGGGGCGGGGGCCGGGCGCGCACGGACCGGCTGTTGTTACCGATCTTTAAGCGGCAGGCGGGAAAAGCGCGCACTTCGGGGGTTTACCTTTGAGAGGGAAAAGCCCAGCTTTGCTTGCTCCACACACACCTCGTTCGCCGTACGGGCACAGCTGCATGTGGCACGCTGGCTCGTCCTCGTGCTGGGAGTGTTAGCAGGTGAGTCAGGGGTGGTGCTAAGGAAAAACGTAGTGGATCCGTCCTTCTGTGCCCCGCGCTCCGAATGTGGCTTGTCAGGCGACAGTGACTTTCAAATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTGGTTGCACATAGCGATTTAGATGAAAGAGCTATCGAAGCTTTAAAAGAATTCAATGAAGACGGCGCATTGGCAGTTCTTCAGCAGTTTAAAGACAGTGATCTCTCTCATGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTATAGGCAGAGAGAAAAACAGGGGACCAAAGTAGCAGATTCTAGCAAAGGACCAGATGAGGCAAAAATTAAGGCGCTCTTGGAAAGAACAGGATACACACTCGATGTGACCACTGGACAGAGGAAGTATGGGGGACCGCCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTTGGCACTGAGATATTTGTAGGGAAGATCCCAAGAGATCTGTTTGAGGATGAACTTGTTCCATTGTTTGAAAAAGCTGGACCTATATGGGATCTTCGTCTAATGATGGATCCACTAACTGGTCTCAATAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAGAAGCAGCTCAGGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACACATTGGTGTCTGCATCTCCGTTGCCAACAACAGGCTTTTTGTGGGCTCTATTCCTAAGAAGGGTCTTACAGACGTCATTTTATACCACCAACCAGACGACAAGAAAAAAAACAGAGGCTTTTGCTTTCTTGAATATGAAGATCACAAAACAGCTGCCCAGGCAAGACGTAGGTTAATGAGTGGTAAAGTCAAGGTCTGGGGAAATGTTGGAACTGTTGAATGGGCTGATCCTATAGAAGATCCCGATCCTGAAGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTGGCCAATACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAATTAAAAGATTATGCTTTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTGGAGGGAGAAAATATTGAAATTGTTTTTGCTAAGCCACCAGATCAGAAAAGGAAAGAAAGAAAAGCTCAGAGGCAAGCCGCAAAGAATCAAATGTATGATGATTACTACTATTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAGGTAGAGGTGGTTATGGATATCCTCCAGATTATTATGGATATGAAGATTATTATGATTATTATGGCTATGATTACCATAACTATCGTGGTGGATATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGCTCCATCCAGAGGTCGCGGGGCTGCTCCTCCCCGCGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTGGATCAGCAAGAGGCGTTCGTGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGGTACGTGGTGCGAGGGGTGGCCGCGGTGGAAATGTAGGAGGAAAGCGCAAAGCTGATGGGTACAACCAGCCAGATTCCAAGCGGCGCCAGACCAATAATCAGAACTGGGGCTCCCAACCCATTGCTCAGCAACCGCTCCAAGGTGGTGATCATTCTGGTAACTATGGTTACAAATCTGAAAACCAGGAGTTTTATCAGGATACTTTTGGGCAACAGTGGAACAGGGAAAAGGGGTCGAGGCCGGTCCTGACCTGTTACAATGAAGACTGA

Related Sequences

bmy_13019T0 SequenceType object (3)

Length: 905 aa      View alignments
>bmy_13019T0
LLGIPHVSVIVVILGIKPGIRSSAGTNENNLAYEVFKHFEEYSSNFLFREPHPKAGAAPRSTGASRFPLKSSRGFLVRAPSAPPSAQGSRGKEATRARGPGVPTVRPGRPSLPGGTPALESRRPGGPKVRGLRAAPLPRRPIVCLAPPRGTRAPAASRARRARGGGGVDTAWNGYAAAASGAGAGRARTGCCYRSLSGRREKRALRGFTFEREKPSFACSTHTSFAVRAQLHVARWLVLVLGVLAGESGVVLRKNVVDPSFCAPRSECGLSGDSDFQISGNMATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKKGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWNREKGSRPVLTCYNED*