Sequence detailsbmy_13059 (Coding sequence)

Part of scaffold_812 (SequenceType object (1))

For more information consult the page for scaffold_812 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCN2AENSTTRG00000005563 (Bottlenosed dolphin)

Gene Details

sodium channel, voltage-gated, type II, alpha subunit

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005250, Bottlenosed dolphin)

Protein Percentage 94.32%
cDNA percentage 94.28%
Ka/Ks Ratio 0.28632 (Ka = 0.0131, Ks = 0.0458)

BT.99915ENSBTAG00000038180 (Cow)

Gene Details

sodium channel protein type 2 subunit alpha

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053208, Cow)

Protein Percentage 97.75%
cDNA percentage 95.35%
Ka/Ks Ratio 0.08511 (Ka = 0.0138, Ks = 0.1623)

SCN2A (Minke Whale)

Gene Details

sodium channel, voltage-gated, type II, alpha subunit

External Links

Gene match (Identifier: BACU010087, Minke Whale)

Protein Percentage 98.39%
cDNA percentage 98.39%
Ka/Ks Ratio 0.31355 (Ka = 0.0109, Ks = 0.0349)

Additional orthologs identified in other species via the OPTIC pipeline.

SCN2A (Human)   Scn2a1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 5598 bp    Location:37665..126706   Strand:+
Raw sequence 
>bmy_13059
ATGGCACAATCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAAGAACGCAAGGATGAAGATGATGAAAATGGCCCAAAGCCAAATAGTGACTTGGAAGCAGGAAAATCCCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGAGCCCCTGGAGGACCTGGACCCCTACTATATCAATAAGAAAGTATGTAACAGAATTTGTAAACCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTCTTGAGAGCTTTGAAAACTATTTCTGTAATTCCAGATATGTGACAGAGTTTGTGGACCTGGGCAATGTCTCAGCGTTGAGAACATTCAGAGTTCTCCGAGCACTGAAAACAATTTCAGTCATTCCAGGCCTGAAGACCATCGTGGGCGCCCTAATCCAGTCGGTGAAGAAGCTCTCAGATGTAATGATCCTGACTGTGTTCTGTCTGAGCGTGTTTGCACTAATAGGATTACAGCTGTTTATGGGCAACCTGCGAAACAAATGTTTGCAATGGCCCCCAGATAATTCTTCCTTTGAAATAAACATCACTTCCTTCTTTAATAACTCATTGGATGGGAATGGTACCACTTTCAATAGGACAGTGAGCATGTTTAACTGGGATGAATATATTGAAGATAAAAGTCACTTCTATTTTTTGGAAGGGCAAAATGATGCTCTGCTTTGTGGCAACAGCTCAGATGCAGGCCAGTGTCCAGAAGGATACATCTGTGTGAAGGCTGGTAGAAACCCCAACTATGGCTACACAAGCTTCGACACCTTTAGCTGGGCTTTCTTGTCCTTATTTCGTCTTATGACTCAAGACTTCTGGGAAAACCTTTATCAACTGACATTACGTGCTGCTGGGAAAACATATATGATATTTTTTGTGCTAGTCATTTTCTTGGGCTCATTCTACCTTATAAATTTAATCCTGGCTGTGGTGGCCATGGCCTATGAGGAACAGAATCAGGCAACGCTGGAAGAGGCTGAACAGAAAGAAGCTGAATTTCAGCAGATGCTTGAACAATTAAAAAAGCAACAAGAAGAAGCTCAGGCAGCAGCTGCGGCCGCATCTGCTGAATCAAGAGACTTCAGTGGTGCTGGTGGGATAGGGGTTTTCTCAGAAAGTTCTTCAGTAGCATCAAAGTTGAGCTCCAAGAGTGAAAAAGAGCTGAAAAACAGACGGAAGAAAAAGAAACAGAAAGAACAGTCTGGAGAAGAAGAGAAGGAAGATGGGGTCCGCAAATCCGAATCTGAAGACAGCATAAGAAGAAAAGGTTTCCGTTTTTCCTTAGAAGGAAGCAGGCTGACATATGAAAAGAGGTTTTCCTCTCCACACCAGTCTTTATTGAGCATCCGTGGCTCCCTTTTCTCTCCAAGACGCAACAGTAGGGCGAGCCTTTTCAGCTTCAGAGGTCGAGCCAAGGACATTGGCTCTGAGAATGACTTTGCCGATGACGAGCATAGCACCTTCGAAGACAATGACAGCAGAAGAGACTCTCTGTTTGTGCCGCACAGACACGGGGAGCGGCGCCCCAGCAACGTCAGCCAGGCCAGCCGCGCCTCCAGGGTGCTCCCCGTTCTGCCCATGAACGGGAAGATGCACAGTTCTGTGGATTGCAACGGCGTGGTCTCCCTGGTCGGGGGCCCTTCTGCCCTCACGTCTCCCGCTGGACAGCTCCTGCCAGAGGGCACAACTACTGAAACGGAAATAAGAAAGAGACGGTCCAGTTCTTATCATGTTTCCATGGATCTGTTGGAAGATCCTACAGCAAAGCAAAGAGCAATGAGTATGGCTAGTATTTTGACCAACACCATGGAAGAACTTGAAGAATCCAGACAGAAATGCCCACCCTGCTGGTATAAATTTGCTAACATGTGTTTGATTTGGGGCTGCTGTAAGCCATGGTTAAAGGTGAAACATGTCGTCAACTTGGTTGTGATGGACCCTTTTGTTGACCTGGCCATCACCATCTGCATTGTCTTAAATACCCTCTTCATGGCCATGGAGCACTATCCCATGACGGAGCAGTTTAGCAGTGTGCTGTCAGTCGGGAACCTGGTCTTCACTGGGATCTTCACAGCAGAAATGTTTCTAAAGATAATTGCCATGGATCCATATTATTACTTTCAAGAAGGCTGGAATATTTTTGATGGTTTAATTGTGAGCCTTAGTTTAATGGAACTTGGTTTGGCAAACGTGGAAGGATTGTCAGTCCTCCGATCATTTCGACTGCTCAGAGTTTTCAAATTGGCAAAATCTTGGCCGACTCTGAACATGCTGATAAAGATCATTGGCAATTCTGTGGGAGCTCTGGGTAACCTCACCTTGGTGTTGGCCATCATCGTCTTCATTTTTGCCGTGGTCGGCATGCAGCTCTTTGGTAAGAGCTACAAAGAATGTGTCTGCAAGATTTCCAATGATTGTGAACTCCCGCGCTGGCACATGCATGACTTCTTCCACTCCTTCCTGATTGTGTTCCGAGTGCTGTGTGGAGAGTGGATAGAGACCATGTGGGACTGCATGGAGGTCGCCGGTCAAACCATGTGCCTTACTGTCTTCATGATGGTCATGGTCATTGGAAACCTGGTGGTTCTGAACCTCTTCCTGGCCTTACTCTTGAGTTCATTCAGTTCTGACAATCTTGCCGCCACTGATGATGATAATGAAATGAATAATCTCCAGATTGCTGTGGGAAGGATGCAGAAAGGAATTGATTATGTTAAAAGAAAATTACGTGAATTTATTCAGAAAGCCTTTGTTAGAAAGCAGAAAGCTTTAGATGAAATTAAACCTCTTGAAGATCTAAATAACAAAAAAGACAGCTGTATTTCCAACCATACCACCATAGAAATAGGCAAAGACCTCAATTATCTCAAAGATGGAAATGGAACTACCAGTGGCATAGGCAGCAGTGTAGAAAAATATGTTGTGGATGAAAGTGATTACATGTCCTTTATAAACAACCCCAGCCTCACTGTGACTGTACCAATTGCTGTCGGAGAATCTGACTTTGAAAATTTAAATACTGAAGAATTCAGCAGCGAGTCAGATATGGAGGAAAGCAAAGAGAAGCTAAATGCAACTAGTTCATCTGAAGGCAGCACTGTTGACATAGGAGCTCCCGCTGAGGGAGAACAACCTGAGGTTGAACCTGAAGAATCTCTGGAACCTGAAGCCTGTTTTACGGAAGACTGTGTGCGGAAGTTTAAGTGTTGTCAGATAAGCATAGAAGAAGGCAAAGGGAAACTCTGGTGGAACTTGAGAAAAACTTGCTATAAGATAGTGGAGCATAACTGGTTCGAAACCTTCATTGTCTTCATGATTCTACTCAGCAGTGGGGCACTGGTCTCATTGGTTAGCTTAACTGCAAATGCTTTGGGTTACTCAGAACTTGGTGCCATCAAATCCCTCAGAACACTAAGAGCTCTGAGGCCATTGAGAGCCTTATCCCGGTTTGAAGGAATGAGGGTCGTTGTCAATGCTCTTTTAGGAGCCATTCCATCCATAATGAATGTACTTCTGGTTTGTCTGATCTTTTGGTTAATATTCAGTATCATGGGAGTGAATCTCTTTGCTGGCAAGTTTTATCACTGTATTAACTACACCACTGGAGAAATGTTTGATGTCAGCGTGGTCAACAACTACAGTGAGTGTAAGGCCCTCATAGAGAGCAACCAAACTGCCCGGTGGAAGAACGTGAAAGTCAATTTTGATAATGTGGGACTCGGGTATCTTTCTCTACTTCAAGTAGCCACATTTAAGGGATGGATGGATATCATGTATGCAGCTGTTGATTCACGAAATGTAGAATTACAACCCAAGTATGAAGACAATCTGTACATGTATCTTTATTTTGTCATTTTTATTATTTTTGGTTCATTCTTTACTCTGAATCTTTTCATTGGTGTCATCATAGATAACTTCAACCAACAGAAAAAGAAGATAAGTCAAGACATTTTTATGACAGAAGAACAGAAGAAATACTACAATGCAATGAAAAAACTGGGTTCAAAGAAACCACAAAAACCCATACCTCGACCTGCTAACAAATTTCAAGGGATGGTCTTTGATTTTGTAACCAAACAAGTCTTTGATATCAGCATCATGATCCTCATCTGCCTCAACATGGTCACCATGATGGTGGAAACTGATGACCAGAGTCAAGAAATGACAAACATTCTGTACTGGATTAATCTGGTGTTTATTGTTCTGTTCACTGGAGAATGTGTGCTGAAATTAATCTCTCTTCGTTATTACTATTTCACCATCGGATGGAATATTTTTGATTTTGTGGTGGTCATTCTCTCCATCGTAGGTATGTTTCTCGCTGAGCTGATAGAGAAATATTTTGTGTCCCCTACCCTGTTCCGAGTGATCCGTCTTGCCAGGATTGGCCGAATCCTGCGTCTGATCAAAGGGGCCAAGGGGATCCGCACGCTGCTCTTTGCTTTGATGATGTCCCTTCCTGCGTTGTTTAACATCGGCCTCCTGCTCTTCCTGGTCATGTTCATCTACGCCATCTTTGGAATGTCCAACTTCGCCTATGTTAAGAGGGAGGTTGGAATTGATGACATGTTCAACTTCGAGACCTTTGGCAACAGCATGATCTGCCTGTTCCAGATTACCACCTCTGCTGGCTGGGATGGATTGCTAGCACCTATTCTTAATAGTGGACCTCCAGACTGTGACCCTGAAAAAGATCACCCTGGCAGCTCAGTTAAGGGAGACTGTGGAAACCCATCTGTGGGGATCTTCTTTTTTGTCAGTTACATCATCATATCATTTCTGGTCGTGGTGAACATGTACATCGCTGTCATTCTGGAGAACTTCAGTGTTGCTACTGAAGAAAGCGCAGAGCCCCTGAGTGAGGATGACTTTGAGATGTTCTATGAGGTCTGGGAGAAGTTTGATCCCGATGCCACCCAGTTCATAGAGTTCTCCAAGCTCTCTGATTTTGCGGCTGCCCTGGATCCTCCTCTTCTCATAGCAAAACCAAACAAAGTCCAGCTCATTGCTATGGATCTGCCCATGGTCAGTGGGGACAGGATCCACTGCCTCGACATTTTATTTGCCTTTACAAAGCGTGTTTTGGGTGAGAGTGGAGAGATGGATGCCCTTCGAATACAGATGGAAGAGAGATTCATGGCATCCAACCCCTCCAAAGTCTCCTATGAGCCCATTACAACCACTTTGAAACGCAAACAAGAGGAGGTGTCTGCTATTGTTATCCAGAGGGCTTATAGACGCTACCTCTTGAAGCAAAAAGTTAAGAAAGTTTCATGTATATATAAGAAGGACAAAGGTAAAGAAGGTGATGGAACACCCATCAAAGAAGATATCCTCATTGATAAACTAAATGAGAATTCAACTCCAGAGAAAACCGATGTGACACCTTCTACCACGTCTCCACCTTCCTATGACAGTGTGACCAAACCAGAAAAAGAAAAATTTGAAAAAGACAAATCAGAAAAGGAAGACAAAGGGAAAGATATCAGGGAAAGTAAAAAGTAA

Related Sequences

bmy_13059T0 SequenceType object (3)

Length: 1866 aa      View alignments
>bmy_13059T0
MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGKSLPFIYGDIPPEMVSEPLEDLDPYYINKKVCNRICKPRQCFSSSNFQSLESFENYFCNSRYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSSFEINITSFFNNSLDGNGTTFNRTVSMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASKLSSKSEKELKNRRKKKKQKEQSGEEEKEDGVRKSESEDSIRRKGFRFSLEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRAKDIGSENDFADDEHSTFEDNDSRRDSLFVPHRHGERRPSNVSQASRASRVLPVLPMNGKMHSSVDCNGVVSLVGGPSALTSPAGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTAKQRAMSMASILTNTMEELEESRQKCPPCWYKFANMCLIWGCCKPWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGLIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDYVKRKLREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIGSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATSSSEGSTVDIGAPAEGEQPEVEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRKTCYKIVEHNWFETFIVFMILLSSGALVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSVVNNYSECKALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKISQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEMTNILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRYLLKQKVKKVSCIYKKDKGKEGDGTPIKEDILIDKLNENSTPEKTDVTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK*