Part of scaffold_809 (Scaffold)

For more information consult the page for scaffold_809 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMPD1 ENSTTRG00000008489 (Bottlenosed dolphin)

Gene Details

sphingomyelin phosphodiesterase 1, acid lysosomal

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008038, Bottlenosed dolphin)

Protein Percentage 92.07%
cDNA percentage 93.54%
Ka/Ks Ratio 0.27077 (Ka = 0.0438, Ks = 0.1619)

SMPD1 ENSBTAG00000015628 (Cow)

Gene Details

Sphingomyelin phosphodiesterase

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020758, Cow)

Protein Percentage 88.24%
cDNA percentage 89.42%
Ka/Ks Ratio 0.20503 (Ka = 0.0663, Ks = 0.3235)

SMPD1  (Minke Whale)

Gene Details

sphingomyelin phosphodiesterase 1, acid lysosomal

External Links

Gene match (Identifier: BACU004497, Minke Whale)

Protein Percentage 96.61%
cDNA percentage 96.85%
Ka/Ks Ratio 0.27066 (Ka = 0.0208, Ks = 0.0768)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1824 bp    Location:500211..504779   Strand:+
>bmy_13088
CTTGTCTCCGAGCAGTCAGCCGACTGCAACGGGGGACTAATCGGTGTCCCTGGCACCGCCAGGGATCCTGAGAGCCAACCAGGGCCTACGCCATCCGGGGCCGGGCGGGCGAACCTGCCTGGTCTAGGAAGCCGGGCGATGCCCCGCCACGGAGTGTCTTCCGGCCAGGGCCGCCCCAGGTCGGGCCGGGAGCAGACACTGGACAGGTCCTTGGGGGCCCCCAGCCTGAGGCTCCTGTGGATGGGCTTGGCGCTGGCCCTGGCCGACTCCCAGGTCCTCTGGGCCCCTGCCGGGGCCCACCCTCTTCCCGCCCAAGGCCATCCCGCCAAGTTCATTCGCCTAGCGCCCCAGCTCCTGGAAGCCTTTAGCTGGTGGAACCTTACCTGCCCCGCCTGCAAAGGACTGTTCACCGCCATCGACATCAGGCTGCGGCACGAGGCCAGCGTGGCCCAGGTGGGCTCCATGGCCATCAAGATGTGCACGCTGCTGAAGATCGCACCGCCTGCTGTGTGCCAGTCAGCTGTCCAGCTCTTTCAGGACGACGTGGTGGAGGTGTGGACGCGCTCGGTGCTGAGCCCATCCGAGGCCTGTGGTCTGCTCCTGGGCTCCTCCTGTGGACACTGGGACATCTTCTCATCTTGGAACATCTCTTTGCCGGCTGTGCCAAAGCCATCCCCCCAGCCGCCCGTGCCCCCGGCCCCAGGCTCCCCCGTCAGCCGCGTCCTCTTCCTCACCGACCTGCACTGGGACCACGACTACCTGGAGGGCACAGACCCCGACTGTGAGAACCCGCTGTGTTGCCGCCAGGATTCCGGCCCACCGCCTGCCTCCCGGCCCGGTGCTGGATACTGGGGCGAGTACAGCAAGTGCGACCTGCCCCTGCGGACCCTGGAGAGCCTGTTGCGTGGCCTGGGCCCCGCCGGCCCTTTTGATATGGTGTACTGGACGGGCGATATCCCTGCCCACAACATCTGGCAGCAGTCTCGTCAGGACCAGCTGCGGGCCCTGACCACCGTCACAGACCTTGTGAGGAAGTTCTTGGGGCCAGTGCCTGTGTACCCTGCTGTGGGCAACCACGAGAGCACACCCGTCAATGGCTTCCCTCCCCCCTTCATAGAGGGCAACCAGTCTTCGCACTGGCTCTATGAGGCGATGGCCAAGGCCTGGGAGCCCTGGCTGCCTGCTGAAGCCCTTCGCACCCTCAGGGCACTGCCTGAAGAGCTGGAGCTGGAATTATTACCGAATCGTGGAGAGTGTCTTCCGGCCAGGTATGAGAACACCTTGGCTGGTCAGTTCTTTGGCCACACCCACGTGGATGAGTTCGAGGTCTTCTATGACGAGGAGACCCTAAGCCGGCCGCTATCTGTAGCCTTCCTGGCACCCAGTGCCACCACCTACATCAGCCTCAATCCTGGGTACCGTGTCTACCAAATAGACGGCAACTACTCCGGGAGCTCTCACCTGGTCCTGGACCACGAGACCTACATCCTGAACCTGACGCAGGCGAATCAGCCCGGAGCCACACCGCACTGGAAGCTCCTCTACAGGGCTCGGGAAACCTATGGGCTGCCCAACGTGCTGCCCGCCGCCTGGCACGACCTGGTGTACCGCATGCGGAGTGACACGCAACTTTTCCAGACCTTCTGGTTTCTCTACCATAAGGGCCACCCGCCCTCAGAGCCCTGTGGCACACCCTGCCGCCTCGCTACTCTGTGCGCCCAGCTCTCCGCCCGGTCAGACAGCCCTGCTCTGTGTCGCCACCTGGCGCCGGACGCAAACCTCCCTCCTGTCCAGAGCCTGCGACCAAGGCCACCATTATGCTAA

Related Sequences

bmy_13088T0 Protein

Length: 608 aa      View alignments
>bmy_13088T0
LVSEQSADCNGGLIGVPGTARDPESQPGPTPSGAGRANLPGLGSRAMPRHGVSSGQGRPRSGREQTLDRSLGAPSLRLLWMGLALALADSQVLWAPAGAHPLPAQGHPAKFIRLAPQLLEAFSWWNLTCPACKGLFTAIDIRLRHEASVAQVGSMAIKMCTLLKIAPPAVCQSAVQLFQDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSSWNISLPAVPKPSPQPPVPPAPGSPVSRVLFLTDLHWDHDYLEGTDPDCENPLCCRQDSGPPPASRPGAGYWGEYSKCDLPLRTLESLLRGLGPAGPFDMVYWTGDIPAHNIWQQSRQDQLRALTTVTDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIEGNQSSHWLYEAMAKAWEPWLPAEALRTLRALPEELELELLPNRGECLPARYENTLAGQFFGHTHVDEFEVFYDEETLSRPLSVAFLAPSATTYISLNPGYRVYQIDGNYSGSSHLVLDHETYILNLTQANQPGATPHWKLLYRARETYGLPNVLPAAWHDLVYRMRSDTQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSARSDSPALCRHLAPDANLPPVQSLRPRPPLC*