Part of scaffold_809 (Scaffold)

For more information consult the page for scaffold_809 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM3 ENSTTRG00000012840 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012183, Bottlenosed dolphin)

Protein Percentage 79.0%
cDNA percentage 78.73%
Ka/Ks Ratio 0.08388 (Ka = 0.0049, Ks = 0.059)

TRIM3 ENSBTAG00000003565 (Cow)

Gene Details

tripartite motif-containing protein 3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004636, Cow)

Protein Percentage 99.46%
cDNA percentage 94.76%
Ka/Ks Ratio 0.00774 (Ka = 0.0023, Ks = 0.2978)

TRIM3  (Minke Whale)

Gene Details

tripartite motif containing 3

External Links

Gene match (Identifier: BACU004493, Minke Whale)

Protein Percentage 99.7%
cDNA percentage 99.01%
Ka/Ks Ratio 0.03233 (Ka = 0.0013, Ks = 0.0393)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2364 bp    Location:576259..552559   Strand:-
>bmy_13091
CCGGGCGGACGGGCGCTGGCAGCAGCGGCAGCGCCGCGGGCCCCTCGGAGTGGCCGCAGTCCGGGTCTTGGCCCTCCCATCCTGCCTCGCCGCGGCTGGTGTGAGTGGCAGGAGCCATCCGTGGGCACCATGGCGAAGAGGGAGGACAGCCCTGGCCCAGAGGTCCAGCCAATGGACAAGCAGTTCCTGGTGTGCAGCATCTGCCTGGATCGGTACCGGTGCCCCAAGGTTCTGCCCTGCCTGCACACCTTCTGTGAGAGATGCCTCCAGAACTACATCCCTGCCCAGAGCCTGACGCTGTCCTGTCCAGTGTGTCGGCAGACGTCCATCCTCCCTGAGCAGGGCGTCTCTGCGCTGCAGAACAACTTCTTCATCAGCAGCCTCATGGAGGCCATGCAGCAGGCACCTGATGGGGCCCACGACCCCGAGGACCCCCACCCCCTCAGCGCAGTGGCTGGCCGCCCCCTCTCCTGCCCCAACCATGAAGGCAAGACGATGGAGTTTTACTGTGAGGCCTGTGAGACGGCCATGTGCGGCGAGTGCCGCGCCGGCGAGCATCGGGAGCACGGCACCGTGCTGCTGCGCGACGTGGTGGAGCAGCACAAGGCCGCCCTGCAGCGCCAGCTCGAGGCGGTGCGCGGCCGACTACCACAGCTGTCCGCTGCCATCGCCTTAGTGGGGGGCATCAGCCAGCAGCTGCAGGAGCGCAAAGCAGAGGCCCTGGCCCAGATCAGCGCAGCCTTCGAGGACCTGGAGCAAGCGCTGCAGCAGCGCAAGCAGGCCCTGGTCAGCGACCTGGAGGCCATTTGTGGAGCCAAGCAGAAGGTGTTACAGACCCAGTTAGACACACTGCGCCAGGGGCAGGAGCACATCGGCAGTAGCTGCAGCTTCGCTGAGCAGGCACTGCGCCTGGGCTCGGCCCCGGAGGTGTTGCTAGTGCGCAAGCACATGCGAGAGCGGCTGGCGGCGTTGGCAGCACAGGCCTTCCCGGAGCGGCCGCATGAGAACGCGCAGCTGGAACTGGCCCTCGAGGTGGACGGGCTGCGGCGATCGGTGCTCAATCTGGGTGCGCTGCTCACTACGAGCGCCACTGCACACGAGACGGTGGCCACTGGCGAGGGCCTGCGCCAGGCGCTGGTGGGCCAGCCCGCCTCTCTCACTGTCACTACCAAAGACAAGGATGGGCGGCTGGTGCGCACAGGCAGCGCCGAGCTGCACGCGGAGATCACGGGCCCCGACGGCACACGCCTGCCGGTGCCCGTGGTGGACCACAAGAAYGGCACGTACGAGCTGGTGTACACGGCGCGCACCGAAGGCGAGCTGCTCCTCTCCGTGCTGCTCTACGGACAGCCGGTGCGCGGCAGCCCCTTCCGCGTGCGGGCCCTGCGTCCTGGGGACCTGCCACCTTCCCCGGACGACGTCAAGCGCCGCGTCAAGTCCCCTGGCGGCCCGGGCAGCCACGTGCGCCAGAAGGCGGTGCGTCGGCCCAGCTCCATGTACAGCACCGGAGGCAAACGGAAGGACAACCCCATTGAGGACGAGCTCGTCTTCCGCGTTGGCAGTCGTGGAAGGGAGAAGGGTGAATTCACCAATTTACAGGGTGTGTCCGCAGCCAGCAGCGGCCGCATAGTGGTAGCAGACAGCAACAACCAATGTATCCAGGTTTTCTCCAATGAAGGCCAGTTCAAGTTCCGCTTTGGGGTCCGAGGACGCTCGCCTGGGCAGCTGCAGCGTCCCACAGGTGTGGCCGTGGACACCAATGGAGACATTATCGTGGCAGACTATGACAACCGTTGGGTCAGCATCTTCTCCCCTGAGGGCAAGTTCAAGACCAAGATTGGAGCTGGCCGCCTCATGGGCCCCAAGGGAGTGGCTGTAGACCGGAATGGRCATATCATTGTGGTCGACAACAAGTCCTGCTGCGTCTTTACCTTCCAGCCCAATGGCAAGCTGGTTGGCCGTTTTGGGGGCCGTGGGGCCACTGACCGCCACTTTGCAGGGCCCCATTTTGTGGCTGTGAACAACAAGAATGAGATTGTAGTGACGGATTTCCATAACCATTCCGTGAAGGTGTACAGTGCCGACGGAGAGTTCCTCTTCAAGTTCGGCTCCCACGGCGAGGGCAATGGGCAGTTCAATGCCCCCACGGGAGTAGCTGTGGACTCCAATGGAAACATCATCGTGGCTGACTGGGGCAACAGCCGCATCCAGGTGTTCGACAGCTCTGGCTCCTTCCTGTCCTATATCAACACATCTGCAGAGCCGCTGTATGGCCCACAGGGCCTGGCACTGACCTCGGATGGCCACGTGGTGGTGGCCGACGCGGGCAACCACTGCTTTAAGGCCTATCGCTACCTCCAGTAG

Related Sequences

bmy_13091T0 Protein

Length: 788 aa      View alignments
>bmy_13091T0
PGGRALAAAAAPRAPRSGRSPGLGPPILPRRGWCEWQEPSVGTMAKREDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSAVAGRPLSCPNHEGKTMEFYCEACETAMCGECRAGEHREHGTVLLRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLEAICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLELALEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPASLTVTTKDKDGRLVRTGSAELHAEITGPDGTRLPVPVVDHKNGTYELVYTARTEGELLLSVLLYGQPVRGSPFRVRALRPGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDSSGSFLSYINTSAEPLYGPQGLALTSDGHVVVADAGNHCFKAYRYLQ*