Part of scaffold_888 (Scaffold)

For more information consult the page for scaffold_888 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TOP2A ENSTTRG00000016905 (Bottlenosed dolphin)

Gene Details

topoisomerase (DNA) II alpha 170kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016028, Bottlenosed dolphin)

Protein Percentage 93.49%
cDNA percentage 94.88%
Ka/Ks Ratio 0.61709 (Ka = 0.0251, Ks = 0.0407)

TOP2A ENSBTAG00000019262 (Cow)

Gene Details

topoisomerase (DNA) II alpha 170kDa

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053858, Cow)

Protein Percentage 94.37%
cDNA percentage 95.02%
Ka/Ks Ratio 0.21009 (Ka = 0.0272, Ks = 0.1295)

TOP2A  (Minke Whale)

Gene Details

topoisomerase (DNA) II alpha 170kDa

External Links

Gene match (Identifier: BACU007035, Minke Whale)

Protein Percentage 96.46%
cDNA percentage 97.27%
Ka/Ks Ratio 0.3874 (Ka = 0.0206, Ks = 0.0533)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4134 bp    Location:323099..301722   Strand:-
>bmy_13561
ATGCTGAAGTTCAAAAGGGAGAATAATTTAATTAGTATATGGAATAATGGAAAAGGTATTCCTGTTGTTGAACACAAAGTTGAGAAGATGTATGTCCCAGCYCTCATCTTTGGACAGCTCCTAACTTCTAGTAACTACGATGATGAAGAAAAGAAAACATGGATGGATAACATGGGGAGAGCTGGTGAGATGGAACTCAAGCCCTTTAGTGGAGAAGATTATACATGTATTACCTTCCACCCTGATTTGTCTAAGTTTAAAATGCAAAGCCTAGACAAAGATATTGTTGCCTTGATGGTTAGAAGAGCATATGATATTGCTGGATCCACTAAAGATGTCAAGGTCTTTCTCAATGGAAATAAGCTTCCAATAAAAGGATTCCGTAGCTATGTAGATATGTATCTGAAGGATAAGGTAGATGAAACTGGCAATCCACTGAAAATTATCCATGAACAAGTAAACCCCAGGTGGGAAGTGTGTTTAACAATGAGTGAAAAAGGCTTTCAGCAAATCAGCTTTGTCAACAGCATTGCTACTTCCAAGGGTGGCAGACATGTTGATTATGTAGCTGATCAGATTGTGACTAAACTTGTTGATGTTGTGAAGAAAAAGAACAAGGGTGGTGTTGCAGTAAAAGCACATCAGGTAAAAAATCACATGTGGATTTTTGTGAATGCCTTAATTGAAAACCCAACCTTCGACTCCCAGACAAAAGAGAACATGACTTTACAAGTCAAGAGCTTTGGATCAACATGCCAATTGAGTGAAAAATTCATCAAAGCGGCAACTGGCTGTGGTATTGTAGAAAGCATACTAAATTGGGTGAAATTTAAGGCCCAAATCCAGTTAAACAAGAAGTGTTCAGCTGTAAAACATAACAGAATCAAAGGAATTCCCAAACTTGATGATGCCAATGATGCAGGAGGCCGAAACTCTACTGAGTGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGTGTGGTTGGGAGAGACAAGTACGGGGTTTTCCCTCTTAGAGGAAAACTGCTTAATGTTCGAGAAGCTTCTCATAAACAGGACCAAGACGGTTCCCATATCAAAGGCTTGCTGATTAATTTTATCCACCATAACTGGCCCTCTCTTCTGCGACATCGTTTTCTGGAAGAATTTATCACTCCCATTGTAAAGGTGTCTAAAAACAAGCAAGAAATGGCATTCTATAGCCTTCCTGAGTTTGAAGAATGGAAGAGTTCTATGCCAAATCATAAAAAATGGAAAGTCAAGTATTACAAAGGTTTGGGCACCAGCACATCAAAAGAAGCTAAAGAGTACTTTGCAGATATGAAAAGACATCGTATCCAATTCAAATATTCAGGTCCTGAAGATGATGCTGCAATCAGCCTGGCCTTTAGCAAAAAACAGATAGATGATCGAAAGGAATGGTTAACTCATTTCATGGAAGATAGAAGGCAACGAAAGTTACTTGGCCTTCCTGAGGATTACTTATATGGGCAAACTACCACATATCTGACATACAATGACTTCATAAACAAGGAACTTATCCTGTTCTCAAATTCTGATAATGAGAGGTCTATCCCATCTATGGTGGATGGTTTGAAACCAGGTCAGAGAAAGGTTTTGTTTACATGTTTCAAACGGAATGACAAGCGAGAGGTGAAGGTTGCCCAGTTAGCTGGGTCAGTAGCTGAGATGTCCTCTTATCATCATGGTGAGATGTCACTAATGATGACCATTATCAATTTGGCTCAGAACTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCCATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATCTTCACAATGCTCAGCCCTTTGGCTCGGTTGTTATTTCCACCAAAAGATGATCACACGTTAAAGTTTTTATATGATGACAACCAACGTGTTGAGCCTGAATGGTACATTCCCATTATACCCATGGTGCTGATAAATGGCGCTGAAGGAATTGGTACTGGGTGGTCCTGCAAAATCCCCAACTTTGATGTTCGTGAAGTTGTGAATAACATCAGACGTTTGATGGATGGAGAAGAACCTTTGCCAATGCTTCCAAGTTACAAGAACTTCAAGGGTACTATTGACGAGCTGGCTCCAAATCAATATGTGATTAGTGGTGAAGTGGCTATTCTTAATTCTACAACCATTGAAATCTCAGAGCTTCCCATCAGAACATGGACCCAGACATATAAAGAACAGGTTCTRGAACCCATGTTGAATGGCACTGAGAAGACACCCCCTCTGATAACAGATTATAGGGAATACCACACAGACACGACTGTGAAGTTTGTTGTGAAGATGACTGAAGAAAAACTGGCAGAGGCAGAGAGAGTTGGACTACACAAAGTCTTCAAACTCCAAACTAGTCTCACATGCAACTCTATGGTGCTTTTTGACCACGTAGGCTGTTTAAAGAAATACGACACAGTGTTGGATATTCTAAGAGACTTCTTTGAACTCAGGCTTAAATATTATGGATTAAGAAAAGAATGGCTTCTAGGAATGCTTGGCGCTGAATCTGCTAAACTGAATAATCAGGCTCGCTTTATCTTAGAGAAAATAGATGGCAAAATAATCATTGAAAACAAGCCTAAGAAAGAATTAATTAAAGTTCTGATTCAAAGAGGTTATGATTCGGATCCTGTGAAGGCTTGGAAAGAAGCCCAGCAAAAGGTTCCAGATGAAGAAGAAAATGAAGAGAGTGACAATGAAAAGGAAACTGAAAAGAGTGACTCTGTAACAGATTCTGGACCAACCTTCAACTACCTTCTTGATATGCCTCTTTGGTATCTAACCAAGGAAAAGAAAGATGAACTGTGCAAACTAAGAAATGAAAAAGAGCAAGAGCTAGAAACATTAAAGAGAAAGAGTCCATCAGATTTGTGGAAAGAAGACTTGGCTGCTTTTATTGAAGAGCTGGAGGCTGTTGAAGCAAAGGAGAAACAAGATGAACAAATAGGACTTCCTGGGAAAGGTGGGAAAGCAAAGGGGAAAAAAACACAAAGGGCAGAAGTTTTGCCTTCTCCATGTGGAAAAAGAGTCATCCCCCAAGTGACCATAGAGATGAAAGCAGAGGCAGAAAAGAAAATTAAAAAAAAAATTAAGAATGAAAATACTGACGGAAGCCCTCAAGAGGATGGGATGGAAATAGAAGGCCTAAAACAGAGATTAGAAAAGAAACAGAAAAGAGAACCAGGTACCAAGACAAAGAAACAAACTACATTGCCATTKAAACCAGTCAAGAAAGCCAAAAAGAGAAACCCCTGGTCTGATTCGGAATCAGATATGAGCAGTAACGAAAGTAATTTTGATGTCCCTCCCCGAGAAAAAGAGCCACGGAGAGCAGCAACAAAAACCAAATTCACARTAGATTTGGATTCAGATGAAGATTTCTCAGATTTTGATGCAAACGCTCAAGATGAAGATTTTGTCCCATCAGATGCTAGTCCACCTGGGACCAAAACGTCCCCAAAACATACTAACAAAGAACTGAAGCCACAGAAAAGTGCCACATCAGGAATTCAGAGCAGGGACAAAAGCAGTAAACAGATTTTCATGTATTGCTTATATGTACTATTTTCCTTTCCATTTGAAGTAACGGACCTTAACGCTGATGATGCCAAGGATAATGTACCACCTCCTCCAAGCTCTCCTGCTGCTGATTTCCCAGCTGTAACTAAAACCATAAACCCTGTTCCTAAAAGGAATGTGACAGTGAAGAAGACGGCAGCAAAAAGTCAGTCTTCCACCTCTACTACAGGGGCCAAAAAAAGGGCTGCACCAAAAGGAACCAAAAAGGATCCAGACTTGGATTCTGATGTCTCTAAAAAGCCTAATCCCCCCCAAACCAAGAGTCGCCGCAAAAGGAAGCCGTCCACTTCTGATGATTCCGACTCTAATTTTGAGCAAATGATTTCTAAAGCAGTCACAAGCAAGAAACCCAAGGAGGACAGCGATGACTTCCATCTGGACTTAGACTCAGCTGTGGCTTCTCGGGCAAAATCTGGACGGACAAAGAAACCTATAAAGTACCTCGAAGAATCAGATGAAGATGATCTGTTTTAA

Related Sequences

bmy_13561T0 Protein

Length: 1378 aa      View alignments
>bmy_13561T0
MLKFKRENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKTWMDNMGRAGEMELKPFSGEDYTCITFHPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPIKGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKLLNVREASHKQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSMPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKNFKGTIDELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIEELEAVEAKEKQDEQIGLPGKGGKAKGKKTQRAEVLPSPCGKRVIPQVTIEMKAEAEKKIKKKIKNENTDGSPQEDGMEIEGLKQRLEKKQKREPGTKTKKQTTLPXKPVKKAKKRNPWSDSESDMSSNESNFDVPPREKEPRRAATKTKFTXDLDSDEDFSDFDANAQDEDFVPSDASPPGTKTSPKHTNKELKPQKSATSGIQSRDKSSKQIFMYCLYVLFSFPFEVTDLNADDAKDNVPPPPSSPAADFPAVTKTINPVPKRNVTVKKTAAKSQSSTSTTGAKKRAAPKGTKKDPDLDSDVSKKPNPPQTKSRRKRKPSTSDDSDSNFEQMISKAVTSKKPKEDSDDFHLDLDSAVASRAKSGRTKKPIKYLEESDEDDLF*