Sequence details bmy_13645 (Coding sequence)

Part of scaffold_903 (Scaffold)

For more information consult the page for scaffold_903 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL23A1 ENSTTRG00000010615 (Bottlenosed dolphin)

Gene Details

collagen, type XXIII, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010067, Bottlenosed dolphin)

Protein Percentage 60.48%
cDNA percentage 67.78%
Ka/Ks Ratio 0.90276 (Ka = 0.4473, Ks = 0.4955)

COL23A1 ENSBTAG00000013183 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017548, Cow)

Protein Percentage 76.13%
cDNA percentage 78.89%
Ka/Ks Ratio 0.53483 (Ka = 0.2094, Ks = 0.3915)

Additional orthologs identified in other species via the OPTIC pipeline.

COL23A1 (Human)   Col23a1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1851 bp    Location:553522..573103   Strand:+
Raw sequence 
>bmy_13645
GTGGCAAGAGGCCCAATAACAAACCCCTTTCCTCTGAGCCTGCCGAGGGCTGGGAGGGCGAAGGCATCTGGCCGCCCATCTGAGGAGGCCTCTCTCTGGAGGCCAGAACCCCTTCCCCTACGCCTCAGAGTCATGCTGGGCCCCATCTCTTTCAGGGAGTTCAAGGGCAAGATGGAGCTGCTGGGCCTCCAGGGCCCCCAGGACCCCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACCAGGCCCAGTGGGCCCGAGTGGACCCCCAGGGCCCAAGGGGGATGATGGGACACCAGGCCAGCCAGGGCTCCCAGGACCCTCAGGGCCCAAGTCCTCTGGGCTGCACTGAGCCCACGGCCCCCAATCCCCGGGTGGGCTCAGGCACGTTCTCAGGAACTACTCCGGAAGCCCACAGACCCAGGCGGCCCCCAGCCTGCCCCAGTGCTCTCTCACAGCACACGCCTCTGTTGCAGGGCAAGCCAGGGAGCGCGGGGCCTCAGGGAGAGAATGGCGTGGACAGAGCCCCGGGGCCCAAGGTGACATCACAGTCCACTGCTCTGCTTCCCAAAGGCCCATCACGGGGGGAGATGGTTTCACCTCCAATTTGCCCTTTTAAGTTGGGAGTCCGGGAGGTCCCAGGCCCAGGGGTCTTGTTTGATTGGCAATCAGAAGCCCACCTGGGGCCTTGGGCTTCTGGGCCTCAGTGGCCCATCTCTACACAACAAGGGTCAGAGGAAGGTCTCTCAGGCCCTCCCTCAGGGAGCCCCATTCCTGGGATGCCAGTCACGTCCACTTGGCCCTGTGTCCTTTGGGTAAGAGGGCACTGGAGGGGGCAGGGGAACTTTTGGCTTCAGCCCTGCACACCTGGCTGCAACCATGCGTCTTCACAGGGGGAGCCCGGCCAGCCAGGCGCCTATGGAGCCACAGGGCCGCGGGGTCCCCCAGGCCTCAAGGGTGAGCAAGGAGACACGGTGGTAATTGACTACGATGGCAGGATCTTGGATGCCCTTATGGGTCCTCCTGGGCCACAGGGGCCCCCCGGGCCAGCAGGGATCCCCGGAGCCAAGGGCGAACTCGGATTGCCTGGTGCTCCAGGAATCGACGGAGAGAAGGGTCCCAAAGGACAGAAAGGAGACCCAGGAGAAGCCGGGCTGATAGGACCCAAAGGGGAAGCAGGAGAGATGGGCCTGTCAGGCCTCCCGGTACGTGGCTGGGTGGGCCTCACCCTACTTGCCCCATGTAGGGGTCCCAAGGGTGCCGACGGCCCCAAGGGGGAGAAGGGAGAGCCGGCATCTGACAACCTACAGGAGAGCCTGGCCAGCACTGGGCCTCCCACCAGGCAGTGCCCTCCTGGGGGCAGCAGGGAGCTCGGCGCCCACACCCAGGGAGTGCTCCTCCAATGTCCGATGAACTCAAGTGCCCAGATCATAGTGGAACCAGGGCCCCCAGGGCCCCCTGGTCCCCCAGGCCCCATGGGCCTTCAGGGAATCCAGGGTCCCAAGGGCTTGGACGGAGCAAAGGGAGAGAAGGGCATGTCGGGTGAGAGAGGACCCAGTGGCCTGCCTGGGCCAGCTGGCCCGCCAGGCCTTATTGGGCTGCCAGGAACCAAAGGAGAGAAGGGCAGACCCGGGGAGCCAGGACTAGATGGTTTCCCTGGACCTCGAGGAGAGAAAGGCGACCGGAGCGAGCGTGGAGAGAAGGGGGAGCGCGGTGTCCCCGGTCGGAAAGGAATGAAAGGCCAGAAGGGCGAGCCGGGACCCCCAGGCCTGGACCAGCCATGTCCAGTGGGCCCTGATGGGCTGCCCGTGCCTGGCTGCTGGCATAAGTGA

Related Sequences

bmy_13645T0 Protein

Length: 617 aa      View alignments
>bmy_13645T0
VARGPITNPFPLSLPRAGRAKASGRPSEEASLWRPEPLPLRLRVMLGPISFREFKGKMELLGLQGPQDPLGPGALLATLGKMAPGEHQAQWARVDPQGPRGMMGHQASQGSQDPQGPSPLGCTEPTAPNPRVGSGTFSGTTPEAHRPRRPPACPSALSQHTPLLQGKPGSAGPQGENGVDRAPGPKVTSQSTALLPKGPSRGEMVSPPICPFKLGVREVPGPGVLFDWQSEAHLGPWASGPQWPISTQQGSEEGLSGPPSGSPIPGMPVTSTWPCVLWVRGHWRGQGNFWLQPCTPGCNHASSQGEPGQPGAYGATGPRGPPGLKGEQGDTVVIDYDGRILDALMGPPGPQGPPGPAGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEAGLIGPKGEAGEMGLSGLPVRGWVGLTLLAPCRGPKGADGPKGEKGEPASDNLQESLASTGPPTRQCPPGGSRELGAHTQGVLLQCPMNSSAQIIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGMSGERGPSGLPGPAGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKGMKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK*