Sequence detailsbmy_13714 (Coding sequence)

Part of scaffold_918 (SequenceType object (1))

For more information consult the page for scaffold_918 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APEX1ENSTTRG00000007860 (Bottlenosed dolphin)

Gene Details

APEX nuclease (multifunctional DNA repair enzyme) 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007430, Bottlenosed dolphin)

Protein Percentage 86.81%
cDNA percentage 89.5%
Ka/Ks Ratio 0.67322 (Ka = 0.1032, Ks = 0.1533)

APEX1ENSBTAG00000002745 (Cow)

Gene Details

DNA-(apurinic or apyrimidinic site) lyase DNA-(apurinic or apyrimidinic site) lyase, mitochondrial

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003559, Cow)

Protein Percentage 96.82%
cDNA percentage 93.52%
Ka/Ks Ratio 0.07285 (Ka = 0.0166, Ks = 0.2278)

APEX1 (Minke Whale)

Gene Details

APEX nuclease (multifunctional DNA repair enzyme) 1

External Links

Gene match (Identifier: BACU008585, Minke Whale)

Protein Percentage 99.65%
cDNA percentage 99.53%
Ka/Ks Ratio 0.1393 (Ka = 0.0017, Ks = 0.0121)

Additional orthologs identified in other species via the OPTIC pipeline.

APEX1 (Human)   Apex1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1068 bp    Location:613570..610548   Strand:-
Raw sequence 
>bmy_13714
AGCCAGGCTGCGATCCAAGCAGGTCAGCTACAGGGTTGTTGTTGTTTTGCCCATAGTAGGGGCTTCTCTGGACTTCTGATCGGCAGGCCTAAGTCGGGATTCTTAATTAAGTCCGTCGATTGGCTGGAGGGCCGATCTCGTGAGGAGGGCAACGCGATAAATATACTGCTTCGGTGGGCGACGTGGAACTGGTGCAGAAGGGTGTTTGTTACAGTGATGCCGAAACGTGGGAAAAAGGGAGCGGTGGCAGAAGACGGGGAAGAGCCCAAGATTGAGCCAGAGGCCAAGAAGAGCAAGGCGGGAGCAAAAAAAAATGAAAAAGAGGCAACAGGAGAGGGGGCAGTCATGTATGAGGACCCCCCAGATCAGAAAACCTCACCCGGTGGCAAATCAGCCACACTGAAGATCTGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAGAAGAAAGGTTTAGATTACTGGTCAGCTCCTTCAGACAAGGAAGGGTACAGTGGTGTGGGCCTACTCTCCCGCCAGTGCCCACTCAAAGTCTCCTATGGCATTGGTGAAGAGGAACATGATCAGGAAGGCAGAGTGATTGTGGCTGAATATGATGCATTTGTGCTGGTGACAGCCTATGTACCTAATGCAGGCCGAGGTCTGGTGCGCCTGGAGTACCGGCAGCGCTGGGATGAAGCCTTTCGCAGATTCCTGAAAGGTTTGGCTTCCCGCAAGCCCCTTGTGCTATGTGGGGACCTCAATGTGGCTCATGAAGAAATTGATCTTCGCAACCCAAAGGGAAACAAAAAGAATGCTGGCTTCACTCCAGAAGAGCGTCAGGGCTTTGGGGAATTGCTGCAGGCTGTGCCACTGACTGACAGTTTCCGGCACCTCTACCCCAACACGGCCTATGCCTATACCTTTTGGACATACATGATGAATGCGCGATCCAAAAACGTTGGTTGGCGCCTTGATTATTTCTTATTGTCTCACTCTCTGTTGCCTGCTTTGTGTGACAGCAAGATCCGTTCCAAGGCTCTGGGCAGTGACCACTGTCCCATCACCCTATATCTAGCACTGTGA

Related Sequences

bmy_13714T0 SequenceType object (3)

Length: 356 aa      View alignments
>bmy_13714T0
SQAAIQAGQLQGCCCFAHSRGFSGLLIGRPKSGFLIKSVDWLEGRSREEGNAINILLRWATWNWCRRVFVTVMPKRGKKGAVAEDGEEPKIEPEAKKSKAGAKKNEKEATGEGAVMYEDPPDQKTSPGGKSATLKICSWNVDGLRAWIKKKGLDYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPEERQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL*