Sequence detailsbmy_13741 (Coding sequence)

Part of scaffold_915 (SequenceType object (1))

For more information consult the page for scaffold_915 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ATG4DENSBTAG00000010727 (Cow)

Gene Details

cysteine protease ATG4D

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000014200, Cow)

Protein Percentage 94.7%
cDNA percentage 92.02%
Ka/Ks Ratio 0.06969 (Ka = 0.0246, Ks = 0.3524)

ATG4D (Minke Whale)

Gene Details

autophagy related 4D, cysteine peptidase

External Links

Gene match (Identifier: BACU002495, Minke Whale)

Protein Percentage 94.94%
cDNA percentage 95.14%
Ka/Ks Ratio 0.33246 (Ka = 0.0354, Ks = 0.1065)

Additional orthologs identified in other species via the OPTIC pipeline.

ATG4D (Human)   Atg4d (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1518 bp    Location:337763..330955   Strand:-
Raw sequence 
>bmy_13741
GCGCCTTCCTGGGCGCCCGCGTCCTGGCCGCGTCCTGGCCCCTGGGGCGCTCGAGCGCGGCCCCTGGGGCCCTCGGTCAGCCCTCCCGGCGCGCCCATGAACTCCGTGTCGCCGGCCGCAGCTCAGTACCGGAGCGGGAGCCAGGAGGACGCGCGCAGCCCCGAGGGCCGCAGGCCACGGCGCCCCCGAACCCCGGACCCCAACGGCCTGGGGCCCTCCGGAGCCAGCGGCCCCGCTCTTGGGTCGCCGGGGACCGGCCCGGGGGAGCCGGACGAAGTGGACAAGTTTAAAGCGAAGTTCCTGACAGCCTGGAACAACGTCAAGTACGGTTGGGCGGTCAAAAGCCGGACCAGCTTTAGCAAGATCTCCAGCGTCCATCTCTGTGGCCGCCGCTACCACTTTGAGGGCGAGGGTGACATCCAGCGTTTCCAGCGGGACTTTGTATCTCGCGTATGGTTCACATACCGCCGGGACTTCCCACCTCTGGCCGGGGGCTGCCTGACCTCCGACTGTGGCTGGGGATGCATGTTACGGAGTGGGCAGATGATGCTAGCTCAGGGACTACTGCTGCACTTCCTGCCCAGAGACTGGACGTGGTCCCTGGGCGCGGGCCTGGGCCCCCCTGAGCCATCGGGGTTGGCCTCTCCCAACCGGTACCGTGGGCCTGCCCACTGGATGCCTCCGCGCTGGGCCCAGGCTGCCCCTGAGCCGGAGCAGGAGCGCCGGCACCGGCAGATTGTATCCTGGTTCGCTGACCATCCCCGGGCCCCCTTCGGCCTACACCGGCTGGTGGAGCTTGGGCAGAGCTCGGGCAAGAAGGCGGGGGACTGGTATGGGCCGTCCCTGGTGGCGCACATACTCAGGAAAGCTGTGGAGAGCTGCTCAGAGGTCACCCGCCTGGTGGTGTACGTTTCTCAGGACTGCACAGTGTACAAGGCGGATGTGGCACGCCTGGTGGCCAGGCCAGACCCCACAGCTGAGTGGAAGTCTGTGGTCATCCTGGTGCCAGTGCGGCTGGGTGGCGAGACTCTCAACCCCGTGTACGTGCCCTGCGTGAAGGAGCTCCTGCGTTCAGAGCTGTGCCTTGGCATCATGGGGGGCAAGCCACGCCACTCACTGTACTTCATTGGCTATCAGGATGACTTCCTCCTCTACCTGGACCCTCACTACTGCCAGCCCACTGTGGATGTCAGCCAGGCTGACTTCCCCCTAGAGTCCTTCCATTGCACCTCACCCCGCAAGATGGCCTTTGCCAAGATGGACCCGAGCTGTACTGTGGGGTTCTATGCTGGAGACAGGAAGGAGTTTGAGACGCTCTGCTCAGAGCTGACCAGGGTCCTCAGCTCCTCCTCAGCCACAGAGCGATACCCCATGTTCACCCTGGTTGAGGGCCATGCTCAGGAYCACAGCCTGGACGACCTCTGCTCCCAGCCCTCCCAGCCGCCACTGCGGCTCCCTCGCACAGGCCGGCTTCTCAAGGCTAAACGCCCAAGCTCTGAGGACTTTGTGTTTTTATAA

Related Sequences

bmy_13741T0 SequenceType object (3)

Length: 506 aa      
>bmy_13741T0
APSWAPASWPRPGPWGARARPLGPSVSPPGAPMNSVSPAAAQYRSGSQEDARSPEGRRPRRPRTPDPNGLGPSGASGPALGSPGTGPGEPDEVDKFKAKFLTAWNNVKYGWAVKSRTSFSKISSVHLCGRRYHFEGEGDIQRFQRDFVSRVWFTYRRDFPPLAGGCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWSLGAGLGPPEPSGLASPNRYRGPAHWMPPRWAQAAPEPEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVARPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLVEGHAQDHSLDDLCSQPSQPPLRLPRTGRLLKAKRPSSEDFVFL*