Part of scaffold_916 (Scaffold)

For more information consult the page for scaffold_916 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLRN2 ENSTTRG00000003939 (Bottlenosed dolphin)

Gene Details

clarin 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003708, Bottlenosed dolphin)

Protein Percentage 95.69%
cDNA percentage 97.27%
Ka/Ks Ratio 0.44664 (Ka = 0.0204, Ks = 0.0456)

CLRN2 ENSBTAG00000003357 (Cow)

Gene Details

clarin-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004355, Cow)

Protein Percentage 94.83%
cDNA percentage 91.81%
Ka/Ks Ratio 0.07165 (Ka = 0.0241, Ks = 0.3362)

CLRN2  (Minke Whale)

Gene Details

clarin 2

External Links

Gene match (Identifier: BACU012525, Minke Whale)

Protein Percentage 99.57%
cDNA percentage 99.14%
Ka/Ks Ratio 0.0899 (Ka = 0.002, Ks = 0.0223)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 699 bp    Location:250827..261802   Strand:+
>bmy_13839
ATGCCTGGATGGTTCAAAAAGGCGTGGTATGGCCTGGCATCTTTACTCAGCTTCTCCTCCTTCATCCTGATCATCGTTGCCCTGGCGGTGCCCCACTGGCTGAGTGGGAAAATCCTTTGTCAGACTGGAGTTGATCTTGTCAATGCCACAGATCCAGAGCTGGTCAAATTCATTGGGGACATTTACTACGGACTCTTCCGCGGTTGTAAGGTGCGGCAATGCGGGCTCGGGGGCCGCCAGTCCCAATTCACGATCTTCCCACACCTGGTGAAGGAGCTCAATGCAGGCCTCCACGTGACAATTCTGTTGCTCCTCTTCCTGGCCTTGGTGCTGGCTCTGGTCAGCATGGGCTTTGCCATTCTCAACATGATCCAGGTTCCGTACCAGGCAGTCAACGGCCCCGGGGGCATCTGYCTATGGAATGTTCTCGCAGGCGGAGTCGTGGCCTTGGCCATCGCCAGCTTCACGGCCGCGGTAAAATTTCACGACCTGACAGAACGAATCGCCAACTTCCAGGAGAAACTCTTCCGCTTTGTGGTGGTGGAGGAAGAGTATGAAGAGTCGTTCTGGATCTGCGTGGCCAGCGCCTCAGCCCACGCCACTAACCTGGTTGTGGTGGCCATCAGCCAGATTCCCCTCCCGGAGATTAAGACCAAGATAGAAGAGGCCACGGTCACGGCCGAGGATATCTTGTATTAA

Related Sequences

bmy_13839T0 Protein

Length: 233 aa      View alignments
>bmy_13839T0
MPGWFKKAWYGLASLLSFSSFILIIVALAVPHWLSGKILCQTGVDLVNATDPELVKFIGDIYYGLFRGCKVRQCGLGGRQSQFTIFPHLVKELNAGLHVTILLLLFLALVLALVSMGFAILNMIQVPYQAVNGPGGICLWNVLAGGVVALAIASFTAAVKFHDLTERIANFQEKLFRFVVVEEEYEESFWICVASASAHATNLVVVAISQIPLPEIKTKIEEATVTAEDILY*