Sequence details bmy_14293 (Coding sequence)

Part of scaffold_977 (Scaffold)

For more information consult the page for scaffold_977 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS9D1 ENSTTRG00000004409 (Bottlenosed dolphin)

Gene Details

VPS9 domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004157, Bottlenosed dolphin)

Protein Percentage 89.11%
cDNA percentage 90.23%
Ka/Ks Ratio 0.22405 (Ka = 0.017, Ks = 0.076)

C16ORF7 ENSBTAG00000021165 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000028205, Cow)

Protein Percentage 92.55%
cDNA percentage 92.22%
Ka/Ks Ratio 0.1194 (Ka = 0.0353, Ks = 0.2952)

Additional orthologs identified in other species via the OPTIC pipeline.

VPS9D1 (Human)   Vps9d1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1974 bp    Location:259119..271335   Strand:+
Raw sequence 
>bmy_14293
TGGGCACAGGAGGCATATACAGAATACCTGAGGAGCGTCCACTACATCTCCCAGGTGCTGCTAGAAGAAGTGGAGACCTCCAAAGAAGCTGGGGAAACTGTGACCCCTGACACCTCGAAGATGCTGAAGCTGGCTGAGCAGTGTCTGGAGAGGGCCCAGTCAACAGCTGCCAAACTTGGGAAAACATGCCTGAGGCCAGCCATGCCTGTGGCTGCTCCCGTCCCCTCTCCTACCAGCCGACACCGCCGGGTATACTCAGATGAGGGAGGGAAGCTCTCTCCATTTCTGCCGCCTGAGATCTTCCAGAAGCTTCAGGTTGTAGAGTCACAAAGCTCTAAGAAGGAGCTGACACCCCTGGAGGAGGCCTCCCTGCAGAATCAGAAGCTGAAGGCTGCGTATGAGGCCCGGATGGCCCGTCTGGACCCCAGCCAGGCCATGCAGAAGACATCCCTGACCCTGTCCCTGCAGCGGCAGGTGATGGAGAACCTGGTGATCGCTAACGCCCGAGAGAAGACACTGCAGAGGAAGATGGAGGAGCGCCGGCTGCGGCTCCAGGAGGCCGCCAACAGGAGGTTCTGCAGCCAGGTTGCCCTGACCCCCGAGGACCGGGAGCAGCGGGCCCTCTACGCCGCCATCCTCGAGTACGAGCAAGACCACGACTGGCCAAAGCGCTGGAAGGCCAAGCTCAAGAGGAGCCCAGGCGACCTGTCCCTGGTGACCAGCCTGGTCTCCCACCTGCTCAGCGTCCCCGACCACCCCATCTCGCAGCTCCTGAAGAAGCTCCAGTGCGCGGTGTACCGGGCGCTGTACCCCATCGTGAGCAGGGGCGCCGCCTCGGCCCTGGGCTGCCGTTCCCTGCCCCCCGACGCCGACGGGCTGCTGGCTCCTGGAAGCCGGCGGCTCCGGCCCTCTCAGAGCCTCTACTGCATGCCCTCCCCCCCGGAGCCCAGCCCAGCCCCAAGGCCCACAGACGGCGCCTCCGCCAGCGCCCCCATCCCCCCACCCCACCCCGGCAACCCGGACAGAGGGGCAGACGGCAGCCCCGCGGGGCCTCCCTCACCCCTGGCGGACACTTCATCCGACCTGCCGGGCAAGGACAGCTCCTTCGGGGACCTGGAACAGTACTTGGCTACTCCTGAGAGGAGGGGCCGGGGCCCTGGGGGGCGGCCTGAGCCCCAGCCCCCAGGGGTAAGGAAGGAGCCGTTGCTGGAGCAGCTGAAGGGCACCGTGCAGGACATACACGACGCCATCGACAGGCTGCTCTCGCTGACCCTCCTGGCTTTTGAAGGCCTGAACACGGCCGCCTCCAAAGACCGCTGCCTGGCCTGTATCGAGGAGCCCTTCTTCTCCCCGCTGTGGCCCCTGCTGCTGGCCGTGTACAGGAGCGTTCACCGCCTGCGGGAGGCCGCCCTGAGCAGRAGCATGGAGCTGTACGGGAACGCGCCCCCGGCGGCCGTCGGCGTCCCCACCAAGCTCCTCCCCCGGGACCCCGAGGCCACGGCAGCCGGCGCCTACCCCTACTGTGCCGCCGCCCAGGAGCTAGGGCTGCTGGTCCTGGAGAGCTGCCCCCAGAAGAAGCTGGAGTGCATTGTGCGGGCCCTGCGGGTCATCTGTGCCTGCGCGGAGGACTACTACCGGGCTCGCGAGGCTGCGCCCCAGCCGGGCATCGCCGCCATTGGCGCCGACGACCTGCTGCCCATCCTGTCCTTTGTGGCGCTGAGGAGTGGCCTCCCCCAGCTGGTGTCGGAGTGTGCAGCCCTGGAGGAGTTCATCCACGAGAGGTACCTGATCGGAGAGGAGGGCTACTGCCTGACGTCACTGCAGAGCGCCCTGAGCTGCGTGGAGCTGCTGCCCCGGCGGGCCCTGGGCAAGGAGCAGAGGACGGGCTGGCCGAGGACTGGCCCGGAGGCACCTGCATGGGGCGGGGGGCTGGCCGAGGTGGGGCTCTCGCCCCCGCCTGACATCAGCCCCTAG

Related Sequences

bmy_14293T0 Protein

Length: 658 aa      View alignments
>bmy_14293T0
WAQEAYTEYLRSVHYISQVLLEEVETSKEAGETVTPDTSKMLKLAEQCLERAQSTAAKLGKTCLRPAMPVAAPVPSPTSRHRRVYSDEGGKLSPFLPPEIFQKLQVVESQSSKKELTPLEEASLQNQKLKAAYEARMARLDPSQAMQKTSLTLSLQRQVMENLVIANAREKTLQRKMEERRLRLQEAANRRFCSQVALTPEDREQRALYAAILEYEQDHDWPKRWKAKLKRSPGDLSLVTSLVSHLLSVPDHPISQLLKKLQCAVYRALYPIVSRGAASALGCRSLPPDADGLLAPGSRRLRPSQSLYCMPSPPEPSPAPRPTDGASASAPIPPPHPGNPDRGADGSPAGPPSPLADTSSDLPGKDSSFGDLEQYLATPERRGRGPGGRPEPQPPGVRKEPLLEQLKGTVQDIHDAIDRLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLAVYRSVHRLREAALSRSMELYGNAPPAAVGVPTKLLPRDPEATAAGAYPYCAAAQELGLLVLESCPQKKLECIVRALRVICACAEDYYRAREAAPQPGIAAIGADDLLPILSFVALRSGLPQLVSECAALEEFIHERYLIGEEGYCLTSLQSALSCVELLPRRALGKEQRTGWPRTGPEAPAWGGGLAEVGLSPPPDISP*