Part of scaffold_961 (SequenceType object (1))

For more information consult the page for scaffold_961 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HLA-DMAENSTTRG00000004277 (Bottlenosed dolphin)

Gene Details

major histocompatibility complex, class II, DM alpha

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004021, Bottlenosed dolphin)

Protein Percentage 92.21%
cDNA percentage 95.24%
Ka/Ks Ratio 0.51168 (Ka = 0.0403, Ks = 0.0788)

BOLA-DMAENSBTAG00000015730 (Cow)

Gene Details

HLA class II histocompatibility antigen, DM alpha chain precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020881, Cow)

Protein Percentage 87.45%
cDNA percentage 89.9%
Ka/Ks Ratio 0.23603 (Ka = 0.0628, Ks = 0.266)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 786 bp    Location:96999..92651   Strand:-
>bmy_14317
ATGGATCATGAGCTGAGCCAGGGAGCTGCGCTGCTACGGCTGCTACCCCTTCTGTGGCTGCTGCCCCAGTCCTGGACTGCCCCTGAAGCTCCTACTCCAGGGTGGAGGGATGAGCTGCAAAACCACACGTTCCTGCACACAATGTACTGCCAGAACGGGAGTCCCAACGTGGGCCTATCCGAAACCTACGACGAGGACCAGCTTTTCTCCTTCGACTTTTCCCAGAATATCCGAGTGCCTCGCCTGCCTGAATTTGCTGACTGGGCTCACAAGCCTCGAGATACTTACAACATTTTCTTTGACAAAGCATTCTGCCGGGCGATCATCGAGGAAATTGGCCCAGAGCTTGAGGGGCAAATCCCTGTGTCTAGAGGGCTCCCCATTGCTGAGGTGTTCACTCTGAAGCCCCTGGAGTTTGGCAAGCCCAACACGCTGGTCTGTTTCGTCAGTAACCTCTTCCCACCCACACTGACTGTGAGCTGGCAGCATCATTCGGCCCCTGTGGAAGGAGCCAGGCCCACTTTTGTCTCAGCCGTCGATGGACTCACCTTCCAGGCCTTTTCTTACTTAAACTTCACGCCAGCACCCTCTGATCTTTTCTCCTGCATCGTGAGTCATGAGATTGACAGCTACACAGCAATCGCCTTTTGGGTGCCCCAGAATGCGCTGCCCTCCGATCTTCTGGAGAACGTGCTGTGCGGTGTAGCCTTTGGCCTGGGTGTGCTGGGCATCATTGTTGGCTTAGTCCTCATCATCTACTTCCGAAAACCTTGCTCAGGTGACTGA

Related Sequences

bmy_14317T0 SequenceType object (3)

Length: 262 aa      View alignments
>bmy_14317T0
MDHELSQGAALLRLLPLLWLLPQSWTAPEAPTPGWRDELQNHTFLHTMYCQNGSPNVGLSETYDEDQLFSFDFSQNIRVPRLPEFADWAHKPRDTYNIFFDKAFCRAIIEEIGPELEGQIPVSRGLPIAEVFTLKPLEFGKPNTLVCFVSNLFPPTLTVSWQHHSAPVEGARPTFVSAVDGLTFQAFSYLNFTPAPSDLFSCIVSHEIDSYTAIAFWVPQNALPSDLLENVLCGVAFGLGVLGIIVGLVLIIYFRKPCSGD*