Part of scaffold_1000 (Scaffold)

For more information consult the page for scaffold_1000 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MALSU1 ENSTTRG00000008920 (Bottlenosed dolphin)

Gene Details

mitochondrial assembly of ribosomal large subunit 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008461, Bottlenosed dolphin)

Protein Percentage 88.95%
cDNA percentage 91.28%
Ka/Ks Ratio 0.34623 (Ka = 0.072, Ks = 0.2079)

C4H7ORF30 ENSBTAG00000019403 (Cow)

Gene Details

uncharacterized protein C7orf30 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025851, Cow)

Protein Percentage 87.79%
cDNA percentage 90.12%
Ka/Ks Ratio 0.45122 (Ka = 0.0859, Ks = 0.1903)

MALSU1  (Minke Whale)

Gene Details

mitochondrial assembly of ribosomal large subunit 1

External Links

Gene match (Identifier: BACU019511, Minke Whale)

Protein Percentage 89.47%
cDNA percentage 92.4%
Ka/Ks Ratio 0.44404 (Ka = 0.0678, Ks = 0.1526)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 519 bp    Location:285773..260178   Strand:-
>bmy_14516
ATGTCCTCTTCAGCTAGCCCCAGGGACTGCGGAGAGGACAGGGGTGCTGCTTTGGGAGATGACACCAGAGATCATACTGGTCCCAAGTTTGACATCGATATGCTGGTTTCACTTCTGAGGCAAGAAAATGCAAGAGACATTTGTGTCATCAAGGTTCCTCCAGAAATGGAATATACAGATTACTTTGTAATTGGTAGTGGAACTTCCACTCGACACTTACATGCCATGGCCTACTACATTGTGAAAATGTACAAATACCTGAAATGTAAAAGTGAGCCTCATGTTAAGATCGAAGGGAAGGACACTGATGACTGGCTCTGTGTGGACTTTGGCAGCATGGTGATTCATTTGATGCTTCCAGAAACCAGAGAAACCTATGAATTAGAGAAATTATGGACCCTTCGTTCTTATGATGACCAGTTAGCTCAGATAGCACCTGAGACCTTACCTGAAGACTTCATTCTTGGAATAGAAGATGACACTTCATCTCTGGCTCCTGTGGAGTTTAAATGTGAATAA

Related Sequences

bmy_14516T0 Protein

Length: 173 aa      View alignments
>bmy_14516T0
MSSSASPRDCGEDRGAALGDDTRDHTGPKFDIDMLVSLLRQENARDICVIKVPPEMEYTDYFVIGSGTSTRHLHAMAYYIVKMYKYLKCKSEPHVKIEGKDTDDWLCVDFGSMVIHLMLPETRETYELEKLWTLRSYDDQLAQIAPETLPEDFILGIEDDTSSLAPVEFKCE*