Part of scaffold_1000 (Scaffold)

For more information consult the page for scaffold_1000 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GPNMB ENSTTRG00000008919 (Bottlenosed dolphin)

Gene Details

glycoprotein (transmembrane) nmb

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008460, Bottlenosed dolphin)

Protein Percentage 92.53%
cDNA percentage 95.57%
Ka/Ks Ratio 0.52291 (Ka = 0.0374, Ks = 0.0715)

BT.99652 ENSBTAG00000000604 (Cow)

Gene Details

transmembrane glycoprotein NMB precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000796, Cow)

Protein Percentage 87.8%
cDNA percentage 92.17%
Ka/Ks Ratio 0.50845 (Ka = 0.0672, Ks = 0.1322)

GPNMB  (Minke Whale)

Gene Details

glycoprotein (transmembrane) nmb

External Links

Gene match (Identifier: BACU003151, Minke Whale)

Protein Percentage 94.93%
cDNA percentage 96.38%
Ka/Ks Ratio 0.70198 (Ka = 0.0341, Ks = 0.0486)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1659 bp    Location:333706..305176   Strand:-
>bmy_14517
ATGGAATGTCTCTACTGTTTCCTGGGATTTCTGCTTCTGGCTGCAAGACTGCCACTTGATGCTGCCAAACGCGTTCATGATGTGCTGAGCAATGAAAGACCTTCTGGTTATATGCGGGAGCACAAGCAATTAAATGGCTGGTCATCAGATGAAAATGACTGGAATGAAAAACTCTATCCAGTGTGGAAGAGGGGAGACTCGAGGTGGAAAAACTCTTGGAAAGGAGGCCGTGTGCAGGCGCTTCTGACCAGTGATGCACCAGCACTGGTGGGCTCAACTATAACATTCGCAGTGAACCTGGTATTCTCCAGATGCCAACAGGAAGATGCCAGTGGCAACATAGTCTATGAGAAGAACTGCAGAAATGATACTGGTCCATCTCCTGACCCATATGTTTACAACTGGACGGCATGGACAGAGGACAGTGACTGGGGAAATGGCACCAGACAAGGCCATCACGGGAAGCCTTTCCCTCACCCCCCGAAATGGAATTTCGTCTATGTGTTCCACACGCTGGGTCAGTATTTCCGGAAACTGGGACAGTGTTCAGTGAGAGTTTCTATAAACACAGCCAATGTGACTCTTGGCCCTCAAATCATGGAAGTAACTGTCTATAGAAGACAGCGATGGGCATACGTTCCCATAGCAAAAGTGAAAGATGTGTATGTGGTAACAGATCAGATTCCTGTATTTGTGACTATGTCCCAGAAGAACAATCGAAATTCATCTGATGAAACCTTCCTCAAGGACCTCCCCATTACATTTGATGTCCTGATTCATGATCCCAGCCACTTCCTCAATGAGTCTGCCATTTACTACAAGTGGAACTTTGGGGATAATACTGGTCTGTTTGTTTCCAACAATCACACTTTGAACCACACCTATGTTCTCAATGGAACCTTCAGTCTCAACCTCACTGTGCAAGCTACAGTGCCTGGACCTTGTCCTTCACCTTCACCCAGACCTCCAAAAACCACCCCTTCTTTGGACTCTCCAGTACCAGCTGGTGACAATGCCCTGGAGCCGAGGGAGATTCCTGATAAAAACTGCTATATTAACAGATATGGCTACTTTAAAGCCACCATCACAATTGTAGAGGGAATTCTAGAGGTTAACATCATCCAGGTGACAGATGTCCTGATGCCCATGCCACAGCCTGACAACCCCCTGGTGGATTTCGTCGTGACCTGCCAAGGGAGCATCCCCACAGAGGTCTGTACCGTCGTCTCCGACCCCACCTGCCAGGTCACCCAGAACACAATCTGCGACCCTGTGAACATGGACCTGGGCGACATGTGCTTGCTGACAGTGAGAAGAGCCTTTGGTGGGTCTGGGACATACTGTATGAACCTCACTCTGGGTGATGATGCAAGCCTGGCCCTTACGAGCACCCTCGTCTCTATCCCTGGAAGAGACCCAGCCTCCCTTTTAAGAATGGCAAATGGTACCCTGGTCTTCGTTGGCTGCATGGCCATATTTGTCACTGTGATCGCCCTTTTGGTGTACAAAAAACACAAGGAATACAAACCAATAGAAAACAGCACTGGGATCGTGGTCAGAGGCAAAGGCCTGAATGTTTTCCTCAATTGTGCAAAGATGTTCTTCCCCGGATACCAGGAAAAAGATCCACTGCTCAAGAACCAACTGGGAATTCTTTAA

Related Sequences

bmy_14517T0 Protein

Length: 553 aa      View alignments
>bmy_14517T0
MECLYCFLGFLLLAARLPLDAAKRVHDVLSNERPSGYMREHKQLNGWSSDENDWNEKLYPVWKRGDSRWKNSWKGGRVQALLTSDAPALVGSTITFAVNLVFSRCQQEDASGNIVYEKNCRNDTGPSPDPYVYNWTAWTEDSDWGNGTRQGHHGKPFPHPPKWNFVYVFHTLGQYFRKLGQCSVRVSINTANVTLGPQIMEVTVYRRQRWAYVPIAKVKDVYVVTDQIPVFVTMSQKNNRNSSDETFLKDLPITFDVLIHDPSHFLNESAIYYKWNFGDNTGLFVSNNHTLNHTYVLNGTFSLNLTVQATVPGPCPSPSPRPPKTTPSLDSPVPAGDNALEPREIPDKNCYINRYGYFKATITIVEGILEVNIIQVTDVLMPMPQPDNPLVDFVVTCQGSIPTEVCTVVSDPTCQVTQNTICDPVNMDLGDMCLLTVRRAFGGSGTYCMNLTLGDDASLALTSTLVSIPGRDPASLLRMANGTLVFVGCMAIFVTVIALLVYKKHKEYKPIENSTGIVVRGKGLNVFLNCAKMFFPGYQEKDPLLKNQLGIL*