Part of scaffold_1000 (Scaffold)

For more information consult the page for scaffold_1000 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUPL2 ENSTTRG00000012802 (Bottlenosed dolphin)

Gene Details

nucleoporin like 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012147, Bottlenosed dolphin)

Protein Percentage 86.14%
cDNA percentage 89.69%
Ka/Ks Ratio 0.78538 (Ka = 0.1043, Ks = 0.1328)

BT.61283 ENSBTAG00000016014 (Cow)

Gene Details

nucleoporin-like protein 2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021317, Cow)

Protein Percentage 77.72%
cDNA percentage 84.32%
Ka/Ks Ratio 0.51203 (Ka = 0.1459, Ks = 0.285)

NUPL2  (Minke Whale)

Gene Details

nucleoporin like 2

External Links

Gene match (Identifier: BACU003153, Minke Whale)

Protein Percentage 88.12%
cDNA percentage 91.17%
Ka/Ks Ratio 0.78589 (Ka = 0.0879, Ks = 0.1118)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1215 bp    Location:381921..352184   Strand:-
>bmy_14518
ATGACCATTTGTCAGTTCTTCCTTCAAGGCCGGTGTCGCTTCGGAGATCGGTGCTGGAACGAACATCCCGGCGCCGGGGGTTTGGGCGAAGGACGGCAGCAGCAGCTCTCAGGTAGTAACAGACGAGGATGGAATACCACCAGCCAGAGATATTCCAGTGTTATCCAGCCATCCAGTTTCTCCAAATCCACACCATGGGGGGGCAGCAGAGATCAGGAAAAGCCATCTTTTGCTTCTTTTGATTCTGGAGCGTCAGCAAGCAGGAACAGTGGGTTTGGATTGTCYCAGAACCCATTTGCTTCACCTAACTCTGATGGGCAGAAAGATGAAAAGAAACTTCTGGAAGGAATTGTAAAAGATATGGAGGTTTGGGAATCATCAGGGCAGTGGATGTTTTCTGTTTATTCACCAGTGAAAAAGAAACCTAATATTTCAGGTTTTACAGATATTTCACCAGAGGAGTTGAGACTTGAATACCGTAACTTCTTAACAAGCAATAACTTACAGAGTTATCTACATTCCATCCAACAGTTAATAAATCAGTGGAGGAACAGGGTAAATGAACTGAAAAGTCTAAATACATCAACTACAATAGCTTTGCTCTCTGATATAAAGGGTGGAGTAAATCAAGCAGCACCTGCGTTTGGATTTGGCAGTAGGCCATCAGTAACATTTGGGTCACCAGGTTTTCCAGTGAATAACAACAGCAGCATTAATGCTCAGAATTTTAGTTTTAAACCAAGCTCTGGATTTGCTACTGCCCCTTCTGGAAGCCCTTCTGTGTTTGGGAATACTCCAGCATTTGGAGCTGTACCCTCYGCCAATTCTGCCATCACTGCTTCTACTCCAGCTTTTGGACTTGGGAAACCCCAAATCACATCTGCTGCTTCATTTTCATTTAAAAGCCCTGCAGCTTCTGGTTTTGGATCATCCGGATTTTCAGGATTTCCAGCTCCTATGGCAGCAGGCCCTGTTGGAGCTCCAGAGGCCCCAGCCTTTGGAAGCGGCAGTTCTTCGGCTGGTTTTGGTAGTCTAGGCTCACAGTCTCACACTGCTTTTTCCAAGTCATCCACAATAATGGCCATGAAGACTGGGAGATTGATCAGCAGCGTTTCCGATCTTTCCATCACACCACCAACATGTCACATTGTATGTTCCTGTGACCACTATGAGGAAGAGAAGGGGGGAGGGGACACTGGAGGCTGCAATGTCTAG

Related Sequences

bmy_14518T0 Protein

Length: 405 aa      View alignments
>bmy_14518T0
MTICQFFLQGRCRFGDRCWNEHPGAGGLGEGRQQQLSGSNRRGWNTTSQRYSSVIQPSSFSKSTPWGGSRDQEKPSFASFDSGASASRNSGFGLSQNPFASPNSDGQKDEKKLLEGIVKDMEVWESSGQWMFSVYSPVKKKPNISGFTDISPEELRLEYRNFLTSNNLQSYLHSIQQLINQWRNRVNELKSLNTSTTIALLSDIKGGVNQAAPAFGFGSRPSVTFGSPGFPVNNNSSINAQNFSFKPSSGFATAPSGSPSVFGNTPAFGAVPSANSAITASTPAFGLGKPQITSAASFSFKSPAASGFGSSGFSGFPAPMAAGPVGAPEAPAFGSGSSSAGFGSLGSQSHTAFSKSSTIMAMKTGRLISSVSDLSITPPTCHIVCSCDHYEEEKGGGDTGGCNV*