Part of scaffold_1020 (Scaffold)

For more information consult the page for scaffold_1020 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RAB11FIP1 ENSTTRG00000016943 (Bottlenosed dolphin)

Gene Details

RAB11 family interacting protein 1 (class I)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016064, Bottlenosed dolphin)

Protein Percentage 83.36%
cDNA percentage 88.05%
Ka/Ks Ratio 0.73388 (Ka = 0.0915, Ks = 0.1247)

RAB11FIP1 ENSBTAG00000011684 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015513, Cow)

Protein Percentage 68.42%
cDNA percentage 78.45%
Ka/Ks Ratio 0.54344 (Ka = 0.2227, Ks = 0.4098)

RAB11FIP1  (Minke Whale)

Gene Details

RAB11 family interacting protein 1 (class I)

External Links

Gene match (Identifier: BACU003050, Minke Whale)

Protein Percentage 85.17%
cDNA percentage 88.94%
Ka/Ks Ratio 0.62058 (Ka = 0.1065, Ks = 0.1716)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4119 bp    Location:114335..143352   Strand:+
>bmy_14641
GGTGCTTGCAAATGTAATACCTGCTTCCCTTATCTGGCCAAAGATGAACAGGCATTTCTGAACTCAAATCAGATAAAAAGAGAGAGCCTTGAGGTGAGGATGGATGGGGTATCTTTGTGGCATCAACTTACAAGCCATAAGAGAACAGTTGCTCCTCTAGAGTCTGATTTTTTCCCCCCATGGGTCCAGAAGCGAAAACTCAAGGCATTAAGAGCTAACTGTGCTGATATTTTCATTTGTTCTCTTAATAAGCCCCCGTGTATCATATATTTGGAGTCAAGAGAATATGCTTTTTATTCAAGAGAAAATTTGGTTGCATGTGAAAAGATCTGGATACCGATAAAGATGACATCGGGCGTTACTGGAAACCCTCCCACCCAGCGTAGGAACCTGATAGCTCGCGTCCAGGACGGGGATCTGCGGGACATGGCTAACCAAGGGAGAACAACCAAGGCTTCCAGAAAGCCTGGTCTGAAAAGGCCTCTTGTGATCCTGAAGAACAGCTGTCCTAGAATCTTAAAATACTGGTGCTTGGTTTTTCCTTTCGTCTTTACCTACAAGGAGTTTGTCAGAAAGAAAAGGCAGCAGTTGTTTCAGTGTAATAAACGCTTTGTGATGTTTGGTGAGCCAGCTCTCTACTGGTGGCTGTTGCCTTGTCTTGTGTTTGACCAAGAAAACCCCAAACCAAAAAACTCCCAAACAGTCCAAAATCGTAGCTCATGTCATTTTCCCAGATCTTGGCTGTATTTTGTAAATCCAGTGTGGTATACCTTGAAATCCAAACCGGGGAAGAAGAATAAAGAACGGGGAGAAATTGAGGTTGACATCCAGTTTATGAGAAACAACATGACCGCTAGCATGTTTGACCTTTCCATGAAAGACAAGTCTCGGAATCCATTTGGGAAACTGAAGGACAAGATCAAGGGGAAGAATAAGGACAGCGCGTCGGATACCGTGTCAGCCATCATCCCCAGCATGACGCCCTCGGCTGACAGCGATGACGAGTCTCCTTCGAAAGACAAGAAGAAGAAGTCAAAGCTCAAGACCTTGTTTTCCAGGTCCAGTCTGCAGAGAACACCACTTTCCCAGTCGATGTCTGTCCTGCCGACTGCAAAGTCAGACAAAGTGCTGCTTCGTCCTGGAGACTTTCAGTCCCAGTGGGAGGACGAGGAAAATGACGAGGACAAGTCCTCCTCTGCCTCGGACGCCTTGTCTCACAAGGGAACGGCAAGTGTGGATCCTAAGCAGCTGAACCAGATCAACTTCAACCCCCCCAAGAAGGAAGGACTCTCCTTCCTGGGAGGCCTTCGGTCTAAGAATGACATCCTTTCCCGCTCGAATGTTTGTATCAATGGGAACCATGTCTATGTGGAGCAGCCCGAAGCCAAGAGCGAGACCAAGGACAGCTCCCCGTCCTCCTCGCCGTCCCCCCAGGGCCTCAGGAAGAAGCATTTGTTCTCATCTACAGAAAACCTGGCCTCTCGACCTTTGAAGGAGCCTGGGGAAGGAGGTGCAGTGCCTTCCGAGTCTTCCACAAAGGACTCTCTCAAGTCCCTGTCCCTGCCGTCCTACCAGCTGCTGGTCAGCGGGGACCTTCGGGAGAACGTGGCTCTCGTGACCTTGGAGGCTGCAAAGGAAACCAAAGACAGCAAGAAACAAGAGAACAAGAAGTCCTCTCTGCTCTCCCTGGTGACCGGGAAGAAGGACACGGCCAAGGGCAGTGAAGGTGAAAGCCCGCCGGCCGCCCCCGGGAAGGAGAGGGAAGGCACACCCGTGGCGGTCAAAGCCAGGGAGGACCAGCCGGGGCCTGTCGCCGACCCTGTGAAGAGATCGGACAAAGAGACTGCGGCCATTGTCTCCGGACGGGGCAGAGCCCCGAACCCCTTTGAAGACGTGCAGATCCCAGAACGAGAAGCTGACCCAGAGCCCAAGGCTGCACCAGCACCACCTGTTCCCTCACCCAGGGCTCCCCAGACCAGAGCCGTGAAACCCCGACTGGAAGTGTCTCCAGAGGCTCAGCCCACACCCAGGCTCCCTCCTTCCACTCAATCTCCTCTCGTTTTCTCTGCTCTCCCTTCCAGTTCTGGTCAGACACCCGTCCCTTCTAAACTGGGGCGTGATTCAGAGACACAGTCCTCTGAATCTCCTTCTGGCTCCTTCTCTCTCCCCTCTCCTGAAGCAGCCCCCATTTCCACATCCACTCCCATTGAACACTGGCCTTCCGCAGACATGGGTGAGGCCAGTCCTAAAGAACCGCCTTCGCTCCTTGAACCAGAGCTAGAACAGGAGAGTTTGACACAAGTTCCAAGTACTGTTCCTTGTGCTGTGGGCTCGCTTTCCAAACAGACACCCATTCCAGTGGGGAAAGGGACGGAAGACTCTCCAGTGGGGAAGACCGGCGCTGATGACCCAGGACAGTCTCTCCAGACGCAGCCTGAAGTGGGGCGAGAAGAAGAAGAGCTTCTGGGGTCTCCCCCTAGAAAACAACAAGGCGCCATCCCTTCATCTGTCGAGGCCCGAGAAGTAACATCCGCCACTGCGCTCGGAAGAGGCGGGATGGGCAGCCCTGCCGGGAAGCCCCCGAGGCGGGGAGCCTCAGGCTCTGCGGGTCAATCTAGGTCTCCCGTGGGGGATGCAGATGGGGGTGGCGGGATGAGTCCTGCAGTTAAGGAAGCGGTGCCCCCCGTTCCCGTGGGCGAGTCGGTGCCTCCACTTGACTCTGCGATGCAGAGCCACGAAGAGATGGGTCTGGATGCCTGTGAGGGCAGAAAGGAAATCGAGGAGCAGGTGTTGTTTTCCGAGCAGCTCTCTACGGAAGGGGCGGGGGAGAAGGCCCCTGTGCTGGTCCGCGGGGACAGAGGTGACCCCCAGGAGCTGACGCCGCAAGGGGCCGCCCCCGGAAATGCGTGGGACACGGGAGACTCCCAGGAGGGCGCGGCTGTGGCTGGACCCCGGCCCGCTGCCCCGGCGGCTCGCCCTCCCCGCCCGTCCTCCAAGGGGAGCTGTTCGGGGGGCCCCGCGCATGCGGCCAGCTCGGGGAGAGACGGTCCCCTTCTCAGGAGTCAGGGAGACGACGCCCAGATGGCGCGGAACCAGATCAAAGCCAGTGACCACGAGGGTCTGCTGTCTGGCCCCCTGCACGGCCTTCAGTCCGCCTGCGAGGCAAAGCCCCCAGCCCTAGCCCATCTGGACTTGACCCTGCCTTCCATCCCCGAAGTCGCTTCGGAAGACGAGAGAGGAGATCAGCTTGAAGATGACAGAGGGATGGCCCCGGTGGCAGCTCTGGGAGGAGGGGCTTCTTCCCTGAGCACATGGCCCGCCCGTGCTGAGCGGGAGAGGGCGCCCAGCGGGGATGCCGGCGGGTCAGCAGGGGGCCTGCGCGACCCCAGGCCGGGAGCGCCCAGAGCACCCGCCCCCGCTTCTGCAGAGCAGACCACAGCCTTGGCGGTTCAGGAACCACAGTCTCCGGGCCCCGGTGACAGCGGGGAGGCAAAACCAGTGGGAGATGGGAGGCCGGGTCAGCCTCCAGCTGCAGCCCTGGATTCCCTTGTGTCCGGCTCCCCCTTTTCTGAGCCCTTTCCTGCCACACGCTCTTTTCCCACCTCTGCACGCTCTGACACCCACCACACCAGTACAGCAGAATCTCAAAAAAAAGCAGCAGTCGAGGGCTCCGCGGGTAAAGTGGAAAACTCTGGCAAGAGGAAGCCGCTTCTTCAGGCCTGGGTCTCACCCTCAGACACACAGCCAGTCTCGGCTCAGCCAAGCGCTGGAAGCGGGTCGGCCAAGCACAGACTTCATCCCGTGAAGCCGATGAACGCGGCAGCCACCAAGGTCGCTCTCTCCAGCTCGGGAACTGCCACCGTCATCAGTGAGAACTTGGTCAACGAAGCCATGATGAAGAAATACAAGCCCTCGGAACCCGAGTTTGCTTATGCACAGCTGACCCACGACGAGCTAATCCAGCTGGTCCTCAAACAGAAGGAAGCGATAAGCAAGAAGGAGTGTCAGGTGCGCCAGCTGGAAGACTACATCGACAACCTGCTGGTCAGGGTCATGGAAGAGACCCCCAGCATCCTCCGGGTTCCCACTCAGGTCGGCAGAAAAGCAGGAAAGATGTGA

Related Sequences

bmy_14641T0 Protein

Length: 1373 aa      View alignments
>bmy_14641T0
GACKCNTCFPYLAKDEQAFLNSNQIKRESLEVRMDGVSLWHQLTSHKRTVAPLESDFFPPWVQKRKLKALRANCADIFICSLNKPPCIIYLESREYAFYSRENLVACEKIWIPIKMTSGVTGNPPTQRRNLIARVQDGDLRDMANQGRTTKASRKPGLKRPLVILKNSCPRILKYWCLVFPFVFTYKEFVRKKRQQLFQCNKRFVMFGEPALYWWLLPCLVFDQENPKPKNSQTVQNRSSCHFPRSWLYFVNPVWYTLKSKPGKKNKERGEIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSASDTVSAIIPSMTPSADSDDESPSKDKKKKSKLKTLFSRSSLQRTPLSQSMSVLPTAKSDKVLLRPGDFQSQWEDEENDEDKSSSASDALSHKGTASVDPKQLNQINFNPPKKEGLSFLGGLRSKNDILSRSNVCINGNHVYVEQPEAKSETKDSSPSSSPSPQGLRKKHLFSSTENLASRPLKEPGEGGAVPSESSTKDSLKSLSLPSYQLLVSGDLRENVALVTLEAAKETKDSKKQENKKSSLLSLVTGKKDTAKGSEGESPPAAPGKEREGTPVAVKAREDQPGPVADPVKRSDKETAAIVSGRGRAPNPFEDVQIPEREADPEPKAAPAPPVPSPRAPQTRAVKPRLEVSPEAQPTPRLPPSTQSPLVFSALPSSSGQTPVPSKLGRDSETQSSESPSGSFSLPSPEAAPISTSTPIEHWPSADMGEASPKEPPSLLEPELEQESLTQVPSTVPCAVGSLSKQTPIPVGKGTEDSPVGKTGADDPGQSLQTQPEVGREEEELLGSPPRKQQGAIPSSVEAREVTSATALGRGGMGSPAGKPPRRGASGSAGQSRSPVGDADGGGGMSPAVKEAVPPVPVGESVPPLDSAMQSHEEMGLDACEGRKEIEEQVLFSEQLSTEGAGEKAPVLVRGDRGDPQELTPQGAAPGNAWDTGDSQEGAAVAGPRPAAPAARPPRPSSKGSCSGGPAHAASSGRDGPLLRSQGDDAQMARNQIKASDHEGLLSGPLHGLQSACEAKPPALAHLDLTLPSIPEVASEDERGDQLEDDRGMAPVAALGGGASSLSTWPARAERERAPSGDAGGSAGGLRDPRPGAPRAPAPASAEQTTALAVQEPQSPGPGDSGEAKPVGDGRPGQPPAAALDSLVSGSPFSEPFPATRSFPTSARSDTHHTSTAESQKKAAVEGSAGKVENSGKRKPLLQAWVSPSDTQPVSAQPSAGSGSAKHRLHPVKPMNAAATKVALSSSGTATVISENLVNEAMMKKYKPSEPEFAYAQLTHDELIQLVLKQKEAISKKECQVRQLEDYIDNLLVRVMEETPSILRVPTQVGRKAGKM*