Part of scaffold_1021 (Scaffold)

For more information consult the page for scaffold_1021 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCDC116 ENSTTRG00000016722 (Bottlenosed dolphin)

Gene Details

coiled-coil domain containing 116

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015855, Bottlenosed dolphin)

Protein Percentage 61.37%
cDNA percentage 65.09%
Ka/Ks Ratio 0.40834 (Ka = 0.1149, Ks = 0.2815)

CCDC116 ENSBTAG00000006173 (Cow)

Gene Details

coiled-coil domain-containing protein 116

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000051906, Cow)

Protein Percentage 78.79%
cDNA percentage 86.04%
Ka/Ks Ratio 0.22194 (Ka = 0.1028, Ks = 0.4633)

CCDC116  (Minke Whale)

Gene Details

coiled-coil domain containing 116

External Links

Gene match (Identifier: BACU017133, Minke Whale)

Protein Percentage 93.94%
cDNA percentage 96.02%
Ka/Ks Ratio 0.56277 (Ka = 0.0347, Ks = 0.0616)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1638 bp    Location:461112..463704   Strand:+
>bmy_14722
ATGACCAGCTGTCGCCACCATTCGGGATACTTGGCGGACGACGAGGCTGGCCACACCACCTACGTGGCCCGGGTCCAGCCACCTAAGAAGTCACTGTTCCCGGAAATGGGGCAAGCCTCCAAGCTGGGCCACACACCACACCCCACTTCGATGCATGGCCCCTCAGGCAGTTCAGGGCTCCGCAGCCACCACCGAAACCCCAAGGGCCCTCGACCCTTTAGGAGCTTCCTGGATTTCCTTGTCGAGGGTCAGGTGCTGGACAGCCTGCAGACGGTGGTGGAGGAGGCAACTGAGCGCATGGCCACCGTAAAGACAGAGGCTGGGGTGCCGCTGGTGGAGGTGGAGGACCCGATGGAGGTGCCAAGGGGTGGGCGTCGGGCGCGGGCCCGGCCCATCCTCAGTACCGTGCACCAGCACTGCACCCGGCCGAGCCTCTGCATGGGGCGCCCCAACAATTACCCGTCCTGCTCCAGCTCCATGTCCGACTCCCACAGCAGCTTCACGGCCAACTGGCCGGGCTCCCATAGCTGGGACAGCGACCTGGGTGCCCGCAGCTTGGGTGCACTGCCACCCATGAAGGACAAACTCCTGCTGGAGAAGAACCTCAAACGGCTGCTGCATCTGGAGAACAGAAGGAAAGGCCTGGGGCAGTCCTGCCCCCACGGGGACTCCCTGCCATGGGACTCACTGGGCAGCCAGACCAGCAGCCAGTGGACCCTAGAGCAGCCCCTGTCCTGGTTCTCAGGCCTGCTGGGCTCGAGCTCAGGCACTCCCGAAGCGTCAGAGCTGGGGCCAGCAGAGCGGGAGCTGATCTTCCTCAAGCGAGAGCTGAACAAGGAGATGAAGTCTTTGCTGAGTCAGCCAGGGTCCTTTGACCTGCCCGGCTACTGTGCGCTCCGAGAGCCCCATCGGACCCTGGACTTCCTGGCTGAGCACCACCTGTTCCCCGCCCTGCAGGACGTGGTCAGCCAGGCTGTGGACAAGCTCAGTGGTGCCTGCCGCCGAGACGGCTGCCCTCTCTTCCCGTCGGAATGGGAGCCCTCCCCAGAGTCCAGCTCCAAGCTGGCCACACCCACTGATGGGAAGGAGCCCTACGATTTGCTGCCCACCACAGCCTCCAGCCCCAGGATGGAGCACAGAAAGAGCATCAAGTACAGGGGACGCGGCAAGGCCAAGGAAGGTGGCTCCCCGGTGTCTAACACCCAAGTGGCCACCAGGTTCCGGCTTGAGGTGACACCCACAGAAGAACCCAAGGTCCCTTCACCCCACCCCAGGCAGGAGGGGCTTGACCAGGACCCCAAAGTACGGAGACTACCCATGCCCACTTCTGGGCCCCTGAGCTCCAGCCAGAGGGCCCAGCCCTGGCGGAGCCTGCACCTTACCCTGCCCGCCACCGGGATTGTGGTGAAAGTGCCCTCCCGACAGACCCATGTCACCACCCCGGTCTCAGCTCCGCTGGCCTCCTCCCTCCCGTCCTCCTCCCACCGCCTCCCCAGGTTCTCACCCCACACCTCCGTGGTAAGGGGCTTCTTGCCATCTCCTGCTGTGCCGTATCCAGAGGTGACCTCCTCAAGGTTGGGGCCAGGGGTCTTAGGGACGGGTTTGCAGTGGAAGGGCTCCTACCGCCACCRCTCCTAG

Related Sequences

bmy_14722T0 Protein

Length: 546 aa      View alignments
>bmy_14722T0
MTSCRHHSGYLADDEAGHTTYVARVQPPKKSLFPEMGQASKLGHTPHPTSMHGPSGSSGLRSHHRNPKGPRPFRSFLDFLVEGQVLDSLQTVVEEATERMATVKTEAGVPLVEVEDPMEVPRGGRRARARPILSTVHQHCTRPSLCMGRPNNYPSCSSSMSDSHSSFTANWPGSHSWDSDLGARSLGALPPMKDKLLLEKNLKRLLHLENRRKGLGQSCPHGDSLPWDSLGSQTSSQWTLEQPLSWFSGLLGSSSGTPEASELGPAERELIFLKRELNKEMKSLLSQPGSFDLPGYCALREPHRTLDFLAEHHLFPALQDVVSQAVDKLSGACRRDGCPLFPSEWEPSPESSSKLATPTDGKEPYDLLPTTASSPRMEHRKSIKYRGRGKAKEGGSPVSNTQVATRFRLEVTPTEEPKVPSPHPRQEGLDQDPKVRRLPMPTSGPLSSSQRAQPWRSLHLTLPATGIVVKVPSRQTHVTTPVSAPLASSLPSSSHRLPRFSPHTSVVRGFLPSPAVPYPEVTSSRLGPGVLGTGLQWKGSYRHXS*