Sequence details bmy_14876 (Coding sequence)

Part of scaffold_1047 (Scaffold)

For more information consult the page for scaffold_1047 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RNF180 ENSTTRG00000016719 (Bottlenosed dolphin)

Gene Details

ring finger protein 180

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015852, Bottlenosed dolphin)

Protein Percentage 94.88%
cDNA percentage 97.12%
Ka/Ks Ratio 0.80546 (Ka = 0.0277, Ks = 0.0344)

RNF180 ENSBTAG00000043992 (Cow)

Gene Details

E3 ubiquitin-protein ligase RNF180

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053251, Cow)

Protein Percentage 91.4%
cDNA percentage 94.53%
Ka/Ks Ratio 0.42882 (Ka = 0.0429, Ks = 0.1001)

RNF180  (Minke Whale)

Gene Details

ring finger protein 180

External Links

Gene match (Identifier: BACU006233, Minke Whale)

Protein Percentage 97.85%
cDNA percentage 98.21%
Ka/Ks Ratio 0.35402 (Ka = 0.0125, Ks = 0.0354)

Additional orthologs identified in other species via the OPTIC pipeline.

RNF180 (Human)  

Genome Location

Sequence Coding sequence

Length: 1176 bp    Location:352075..306279   Strand:-
Raw sequence 
>bmy_14876
ATGATAGCAAATTGGGTATATCATGATGTAGATTCTGTAATTCCAAAAAAGCGGGGAATGAAGAGAAGTAAAGAATTGATAACTAAAAATCATAATCAAGAAGAAATAAGTATTCTTCGTTGTTGGAAATGTAGAAAATGCATAGCAGGTTCTGGTTGTTTCATGGAATGTCTTGAGCATCAAGTGACTAAGGCCCAGTGGACAGTTGGAAAACTGAATTGCCCTTTCTGTGGGGCCCGTTTAGGGGGCTTTAATTTTGTCAGCACTCCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTCCAAAAGCCGGACCGATTATCAGCCCACACAGTCAGGCCGACTAATGAGACCCTCGCTGAAATACTTGTCACATCCTAGAGTTCAGTCAGGTTGTGACAAGGAAACTCTGCTGACAGGTGGCGCCTCCAAAAACAGAAATCACGGGCTTTTAAACATGGCCCAAAATAATAATGGTCCTGGAAGATTAACGGAAGCACTCTGCCTGGAGGTACGGTCAACATATTTCAAGATGAAGAACGAAAAACTGCTCTTCAAAGCATCAGATCCAAAATATCAGCTTTTTGTTCCGCAGCTTGTGACCGGCAGATGCACTACGAGAGCTTTTCATAGAAAATCACGTAGCTTGGATCTGAACATCAGTGAGAAACTGACTTTATTACCCACTTTATATGAAATCCATAGTAAGACTACTGTGTATCCCAGGCTAAATGAAACGCAGCCTGTTGACCTTTCGGGCTTGCCTTTAGAATCGAGTAAAAATAACCGTTCCTTTCAGATTTCATCCAGTTTTGATCCTAATATGCTGCTGCAAAGATTTTCAGTGGCTCCCCGTGAGACCCAGACACAAAGAGGAGGAGAATTTCAGTGTGGTCTAGAAGCTTCTGCAGTGTACTCTGGCCATGCTAGTTCTAACAACCTGACTTTCCTGATGGACATGCCCTCAGCTGGCAGGAGCACACTGGAGGCCCCAGACCAGGAAGAGCACCTCTCTCCTCTGGATTTCCTGCACTCAGGCAGTTTTTCATTGGGTGCCATTAATCAGAGGCTCAGTAAGAGAGAAAAGAGCAAGCTGAAGAATCTGAGACGGAAACAACGAAGGCATGAAAGATGGCTGCAGAAGCAGGTAATTTTTAAAAGAGTTTACTAA

Related Sequences

bmy_14876T0 Protein

Length: 392 aa      View alignments
>bmy_14876T0
MIANWVYHDVDSVIPKKRGMKRSKELITKNHNQEEISILRCWKCRKCIAGSGCFMECLEHQVTKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTQSGRLMRPSLKYLSHPRVQSGCDKETLLTGGASKNRNHGLLNMAQNNNGPGRLTEALCLEVRSTYFKMKNEKLLFKASDPKYQLFVPQLVTGRCTTRAFHRKSRSLDLNISEKLTLLPTLYEIHSKTTVYPRLNETQPVDLSGLPLESSKNNRSFQISSSFDPNMLLQRFSVAPRETQTQRGGEFQCGLEASAVYSGHASSNNLTFLMDMPSAGRSTLEAPDQEEHLSPLDFLHSGSFSLGAINQRLSKREKSKLKNLRRKQRRHERWLQKQVIFKRVY*