Part of scaffold_1063 (Scaffold)

For more information consult the page for scaffold_1063 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH20 ENSTTRG00000000927 (Bottlenosed dolphin)

Gene Details

protocadherin 20

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000873, Bottlenosed dolphin)

Protein Percentage 91.36%
cDNA percentage 92.66%
Ka/Ks Ratio 0.59113 (Ka = 0.0329, Ks = 0.0556)

PCDH20 ENSBTAG00000011862 (Cow)

Gene Details

protocadherin-20

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015745, Cow)

Protein Percentage 91.3%
cDNA percentage 90.69%
Ka/Ks Ratio 0.25372 (Ka = 0.0579, Ks = 0.2284)

PCDH20  (Minke Whale)

Gene Details

protocadherin 20

External Links

Gene match (Identifier: BACU003191, Minke Whale)

Protein Percentage 95.83%
cDNA percentage 96.24%
Ka/Ks Ratio 0.73473 (Ka = 0.0355, Ks = 0.0483)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2451 bp    Location:186410..166845   Strand:-
>bmy_14905
ATGTCCGCTTTCTCCAGCTTCGAGAAGCGGGAGCTCTGCGCCCGGCCACGAAGGAAAGGGACAGAGAAAGGAACAAACAAGACAGACCTCCGGCAGGCTGCCCATCTGCTTCTGTTTTTCCTCTTCGTGGGACCCTTCAACTGCCTGGCGAGTTACAGCCGCGCCACGGAGCTTCTGTACAGCCTGAACGAGGGACTGCCCGCGGGGGTGCTCATCGGCAGCCTGGCCGAGGACCTGCGGCTGGTGCCCGGAGCAGGGAGGCAGGACACGCAGTCGCAGCCCCCGGAGCACAGCGGCGCCGAGCGGAACCCTCCTCTCTCCTTCAGCYTGGCCTCCCAGGGACTGAGTGGCCAGTACGTGACCCTGGACAACCGCTCCGGGGAGCTGCACACTTCTGCCCAGGAGATCGACAGGGAGGCCCTGTGTCTTGAAGGAGGTGGAGGGGCTGCCTGGGGGGGCAGCATTTCCATCTCCTCTTCGCCTTCCGCTGACTCTTGTCTTTTGCTTCTGGATGTACTGGTCCTGCCTCAGGAATACTTTAGGTTTGTGAAGGTGAAAATCGCTATCCGGGACATCAATGACAATGCCCCACAGTTCCCTGTTTCCGAAATATCGGTTTGGGTCCCAGAAAATGCACCTGTAAACACCCGGCTGGCCATAGAGCATCCTGCCATGGACCGAGATATAGGCACTAACGGAGTCCAGACCTACCGCTTGCTGGACTACCATCGTATGTTCACCCTGGACGTGGAGGAGAATGAGAATGGGGAGCGAACCCCCTACCTAATTGTCATGGGACTGTTGGACAGGGAGACCCAGGACCAGTATGTGAGCATCATCATAGCTGAGGATGGTGGGTCTCCACCACTGTTGGGCAGTGCCACCCTCACCATTGGCATAAGTGACATTAATGACAATTGCCCTCTCTTCACAGACTCACAAATCAATGTCACTATGTATGGGAATGCTACAGTGGGCACACCAATTGCAGCTGTCCAGGCTGTGGACAGAGACTTGGGAAACAATGCTCAGATCACCTACTCTTACAGCCAGAAAGTTCCACAAGCATCCAAGGATTTATTCCATCTGGATGAAAACACTGGAGTCATTAAACTTTTCAGTAAGATTGGGGGAAGTGTTCTGCAAACACACAAGCTCACCATTCTTGCTAATGGGCCGGGCTGCATCCCTGCTGTGATAACTGCCCTGGTGACCATTATCAAAGTCATTTTCAGACCACCTGAAATTGTCCCTCGTTATATAGTGAATGAGATAAATGGTATTGTTTACCTGAAAGAACTGGAACCTGTTAACACTCCAATTGCATTTTTCACCATAAGAGATCCAGAAGGTAAATACAAGGTGAACTGCTACTTGGATGGTGAAGGACCATTTAGGTTATCACCCTACAAACCATACAGTAATGAGTATCTGCTAGAAACCACAAAACCTATGGATTATGAGCTACAGCAGTTCTATGAAATAGCTGTGGTAGCCTGGAACTCTGAGGGATTTCATGTCAAAAAAATGATTAAAGTGCAACTTTTAGATGACAATGATAATGCTCCTATTTTCCTTCAACCCTTGGTGGAACTAACCATTGAAGAAAACAACTCACCCAATGCCTTTTTGACTAAGCTAGATGCTACAGATGCTGACAGTGGAGAGAGGGGACAAGTTTCATATTTTCTGGGACCTGATGCTCCATCATATTTTTCCTTAGACAGTGTCACAGGAGTTCTGACCGTTTCTACTCAGCTGGATCGAGAAGAGAAAGAAAAGTACAAGTACACAGTCAGAGCTGTTGACTCTGGGAAGCCACCCAAAGAATCAGTAGCCACCGTGGCTATCACAGTGTTGGATAAAAATGACAACAGTCCTAGGTTCATCAACAAGGACTTCAGCTTCTTTGTGCCAGAAAACTTTCCAGGATATGGTGAAATTGGAGTAATTAGTGTAACAGATGCCGATGCTGGGCAAAATGGATGGGTTGCCCTCTCCGTGGTGAACCAGAGTGATATTTTTGTCATAGACACAGGAAAGGGCATGCTGAGAGCCAAAGTCTCTTTGGACAGAGAGCAGCAAAGCTCCTATACTTTGTGGGTTGAAGCTGTTGATGGAGGTGAGCCTCCCCTCTCCTCTACCACAAAAATCACAATTCTCCTTCTAGATATCAATGACAACCCACCTCTTGTTTTATTTCCTCAATCTAACATGTCTTACCTGTTGGTATTACCTTCTACTCTCCCTGGCTCCCCAGTTACAGAGGTCTACGCAGTTGACAAAGACACAGGCATGAATGCTGTCATAGCTTACAGCATCATAGGGAGAAGAGGTCCTAGGCCTGAGTCCTTTAGGATTGACCCTAAAACTGGCAACATTACTTTGGAGGAGGCATTGCTGCAGACAGATTATGGGCTCCATCGTTTACTGGTGAAAGTTGAAAAGTGA

Related Sequences

bmy_14905T0 Protein

Length: 817 aa      View alignments
>bmy_14905T0
MSAFSSFEKRELCARPRRKGTEKGTNKTDLRQAAHLLLFFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLVPGAGRQDTQSQPPEHSGAERNPPLSFSLASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGAAWGGSISISSSPSADSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSEISVWVPENAPVNTRLAIEHPAMDRDIGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTMYGNATVGTPIAAVQAVDRDLGNNAQITYSYSQKVPQASKDLFHLDENTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIKVIFRPPEIVPRYIVNEINGIVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSPYKPYSNEYLLETTKPMDYELQQFYEIAVVAWNSEGFHVKKMIKVQLLDDNDNAPIFLQPLVELTIEENNSPNAFLTKLDATDADSGERGQVSYFLGPDAPSYFSLDSVTGVLTVSTQLDREEKEKYKYTVRAVDSGKPPKESVATVAITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGQNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPPLSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVEK*