Sequence detailsbmy_14912 (Coding sequence)

Part of scaffold_1055 (SequenceType object (1))

For more information consult the page for scaffold_1055 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MMP13ENSTTRG00000002175 (Bottlenosed dolphin)

Gene Details

matrix metallopeptidase 13 (collagenase 3)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000002042, Bottlenosed dolphin)

Protein Percentage 78.77%
cDNA percentage 79.53%
Ka/Ks Ratio 0.2963 (Ka = 0.0122, Ks = 0.0412)

Additional orthologs identified in other species via the OPTIC pipeline.

MMP13 (Cow)   MMP13 (Human)   Mmp13 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1416 bp    Location:31920..21735   Strand:-
Raw sequence 
>bmy_14912
ATGCACCCAGGTGTCCTGGCTGCCTTCCTCTTCTTGACTTGGACTCATTGTTGGTCCCTGCCTCTTCCCAATGATGGAGATTCTGACGATTTGTCCGAGGAAGACTTCCAGTTTGCAGAGAACTACCTGAAATCATACTACTATCCTCTGAATCCTGCTGGAATCCTGAAGAAGACGGCAGCAAGCTCTGTGGTTGACAGGCTTAGAGAAATGCAGTCTTTTTTCGGCTTAGAGGTGACTGGCAGACTTGATGATAACACCTTAGACATCATGAAAAAACCAAGATGTGGGGTCCCTGATGTGGGTGAATACAATGTTTTTCCTCGAACTCTCAAATGGTCCAAAATGAACTTAACATACAGAATTGTGAATTATACCCCTGACTTGACTCATTCTGAAGTTGAAAAGGCATTCAAAAAAGCCTTCAAAGTTTGGTCTGGTGTGACACCTCTGAATTTTACCAGAATTCACAGTGGCACTGCGGATATCATGATCTCTTTTGGAACTAAAGAGCATGGTGACTTCTACCCATTTGATGGACCCTCTGGTCTATTGGCTCACGCTTTTCCTCCTGGACCAAATTATGGAGGAGATGCCCATTTTGATGATGATGAAACTTGGACAAGTAGTTCCAAAGGCTACAACTTGTTTCTTGTTGCTGCCCATGAGTTTGGCCATTCCTTAGGTCTTGACCACTCCAAGGACCCAGGGGCTCTCATGTTTCCCATATATACCTACACTGGCAAAAGCCATTTTATGCTTCCTGATGATGATGTACAAGGGATCCAGTCTCTCTATGGTCCAGGAGATGAAGACCCCAACCCTAAACATCCCAAAACGCCAGACAAATGTGATCCTTCCTTATCCCTTGATGCCATTACCAGTCTCCGAGGAGAAACAATGATCTTTAAAGACAGATTCTTCTGGCGTCTGCATCCTCAGCAGGTTGACGCAGAGCTGTTTTTAACAAAATCCTTTTGGCCAGAACTTCCCAACCGTATTGATGCTGCATATGAACACCCTTCCCATGACCTTATCTTCATCTTTAGAGGCAGAAAATTTTGGGCTCTTAATGGTTATGATATTCTGGAAGGTTATCCCAGAAAAATATCCGAACTGGGATTTGCAAAAGATGTTAAAAAGATAAGTGCGGCCGTTCACTTTGAGGATACAGGCGAGACGCTCTTCTTCTCAGGAAACCAAGTCTGGAGCTATGATGAAACTAACCATATGATGCATAAAGACTACCCCAGACTAATAGAAGAGGACTTCCCAGGAATTGGCGATAAAGTAGATGCTGTCTTCGAGAAAAATGGTTATATCTATTTTTTCAATGGACCTATACAGTTTGAATACAGCATCTGGAGTAACCGTATTGTTCGTGTCATGCCAACAAATTCCCTATTGTGGTGTTAA

Related Sequences

bmy_14912T0 SequenceType object (3)

Length: 472 aa      
>bmy_14912T0
MHPGVLAAFLFLTWTHCWSLPLPNDGDSDDLSEEDFQFAENYLKSYYYPLNPAGILKKTAASSVVDRLREMQSFFGLEVTGRLDDNTLDIMKKPRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDLTHSEVEKAFKKAFKVWSGVTPLNFTRIHSGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPRKISELGFAKDVKKISAAVHFEDTGETLFFSGNQVWSYDETNHMMHKDYPRLIEEDFPGIGDKVDAVFEKNGYIYFFNGPIQFEYSIWSNRIVRVMPTNSLLWC*