Part of scaffold_1060 (Scaffold)

For more information consult the page for scaffold_1060 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHD1 ENSTTRG00000013714 (Bottlenosed dolphin)

Gene Details

chromodomain helicase DNA binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013016, Bottlenosed dolphin)

Protein Percentage 90.92%
cDNA percentage 91.1%
Ka/Ks Ratio 0.28844 (Ka = 0.0084, Ks = 0.0291)

CHD1 ENSBTAG00000020860 (Cow)

Gene Details

chromodomain-helicase-DNA-binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000034848, Cow)

Protein Percentage 97.76%
cDNA percentage 96.2%
Ka/Ks Ratio 0.07977 (Ka = 0.0125, Ks = 0.1563)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5244 bp    Location:178149..126264   Strand:-
>bmy_14963
ATGAAGCCAGATGAAATTACATCAAAAGCTGAGTCTACCATCCAGTCGGATGATGATTCTGGGTCAGCGTCAGGCTCTGGATCTGGTTCAAGTTCTGGAAGCAGTAGTGATGGAAGCAGTAGCCAGTCAGGTAGCAGTGACTCTGACTCTGGATCTGAATCGGGCAGTCAGTCAGAGTCTGAGTCAGACAATTCCCGAGAAAATAAAGTTCAAGCAAAACCACCGAAAGTTGATGGAGCTGAGTTTTGGAAATCTAGCCCTAGTATTCTGGCTGTTCAGAGATCTGCAATGCTCAAGAAGCAGCAGCAGCAGCAACATCAAGCTTCATCTAATAGTGGATCAGAAGAGGATTCTTCTAGCAGTGAAGATTCCGATGACTCATCGAGTGAGGTCAAAAGGAAAAAGCATAAAGATGAAGATTGGCAGATGTCTGGGTCAGGATCTCCATCTCAGTCTGGTTCAGATTCAGAATCTGAAGAAGAAAGAGATAAAAGTAGTTGTGATGAAACAGAATCTGATTATGAGCCAAAAAACAAAGTTAAAAGTAGAAAACCTCAAAATAGATCTAAGTCAAAAAATGGAAAAAAGATTATTGGACAAAAAAAGAGACAGATTGATTCATCTGAGGAGGAGGATGAAGAAGACTATGATAATGATAAAAGAAGCTCTCGTCGACAAGCAACTGTCAATGTTAGCTATAAGGAAGACGAAGAAATGAAAACAGATTCTGATGACCTACTTGAAGTCTGTGGAGAGGATGTTCCTCAACCCGAGGAAGAGGAATTTGAAACAATAGAACGGTTTATGGATTGTCGGATTGGGAGAAAAGGAGCTACTGGTGCTACTACAACCATCTATGCAGTTGAAGCAGATGGTGACCCAAATGCAGGATTTGAAAAAAACAAGGAACCAGGAGAGATCCAGTATTTAATTAAATGGAAAGGATGGTCACATATCCACAATACTTGGGAGACAGAAGAAACCCTTAAGCAGCAGAATGTTAGAGGAATGAAAAAATTAGATAATTATAAGAAAAAAGATCAGGAAACAAAAAGATGGTTGAAAAATGCTTCTCCAGAAGATGTGGAATATTATAATTGCCAGCAAGAACTTACAGATGATCTCCATAAGCAGTATCAAATAGTGGAGCGAATAATTGCTCATTCCAATCAAAAGTCAGCTGCTGGCTATCCTGATTATTATTGCAAATGGCAGGGCCTTCCATACTCAGAGTGCAGCTGGGAAGATGGAGCTCTCATTTCCAAAAAATTTCAAGCATGCATAGATGAGTATTTCAGCAGGAATCAATCAAAAACTACTCCTTTTAAAGACTGCAAAGTTTTAAAACAGAGGCCAAGATTTGTAGCCCTAAAGAAGCAGCCATCCTATATTGGAGGACATGAGGGATTAGAATTAAGAGATTATCAACTGAATGGTTTAAATTGGCTTGCTCACTCTTGGTGCAAAGGAAATAGTTGCATACTTGCTGATGAAATGGGCCTTGGAAAAACAATACAGACGATATCATTTCTGAACTATTTGTTTCATGAACACCAATTATATGGACCTTTTCTATTAGTAGTACCACTCTCCACTCTCACTTCCTGGCAAAGGGAGATTCAAACATGGGCTTCTCAAATGAATGCTGTGGTTTATTTAGGTGACATCAACAGCAGAAACATGATAAGAACTCATGAATGGATGCATCCCCAGACCAAACGGTTAAAATTTAATATACTGTTAACAACTTATGAAATCTTATTGAAGGATAAGGCATTCCTTGGAGGTCTAAATTGGGCATTTATAGGTGTAGATGAAGCACATCGATTAAAGAATGATGATTCTCTTCTGTATAAAACTTTAATAGATTTTAAGTCCAATCACCGTCTCCTTATCACTGGAACTCCTCTGCAAAACTCCCTCAAAGAGCTCTGGTCTTTGCTACATTTCATTATGCCAGAAAAGTTTTCTTCCTGGGAAGATTTTGAAGAAGAACATGGCAAAGGCAGAGAATATGGTTATGCAAGCCTCCACAAGGAGCTTGAGCCATTTCTGTTACGCAGGGTTAAGAAAGATGTGGAAAAATCTCTTCCTGCCAAGGTTGAGCAGATTTTAAGAATGGAAATGAGTGCTTTACAGAAACAATATTACAAATGGATATTAACTAGAAATTACAAAGCCCTCAGCAAAGGTTCCAAGGGCAGTACCTCAGGCTTTTTGAATATTATGATGGAGCTAAAGAAATGTTGTAACCATTGCTACCTCATTAAACCACCAGATAATAATGAATTCTATAATAAACAGGAGGCCTTACAACACTTAATCCGTAGTAGCGGAAAATTAATTCTTCTTGACAAACTGTTAATTCGCCTAAGAGAGCGAGGCAATAGAGTTCTTATTTTTTCTCAAATGGTGCGGATGTTAGATATACTTGCAGAATATTTGAAGTATCGTCAATTCCCCTTTCAAAGATTAGATGGATCAATAAAAGGGGAGCTGAGGAAACAAGCTCTAGATCATTTTAATGCTGAAGGATCAGAGGATTTCTGCTTTTTGCTTTCCACAAGAGCTGGAGGTTTAGGAATTAACTTAGCCTCAGCTGACACTGTTGTTATATTTGATTCTGATTGGAATCCACAAAATGATCTTCAGGCACAGGCTAGAGCTCATCGAATTGGGCAAAAGAAACAGGTGAACATTTATCGTCTAGTTACAAAGGGATCAGTTGAAGAGGATATTCTTGAAAGGGCCAAAAAGAAGATGGTTTTAGATCATCTTGTGATTCAAAGAATGGACACAACTGGGAAGACATTTGGTGCTGAGGAACTTTTTAAGGAGCCCGAGGGAGAAGAACAAGAGCCCCAGGAAATGGATATAGATGAAATCTTGAAGAGGGCTGAAACTCATGAAAATGAACCAGGACCTTTAACTGTAGGAGATGAATTACTTTCTCAGTTCAAGGTTGCCAACTTTTCAAATATGGATGAGGATGACATTGAGTTGGAACCTGAAAGAAATTCAAAGAATTGGGAAGAAATCATTCCTGAAGATCAAAGAAGACGATTAGAAGAGGAAGAAAGACAAAAGGAACTTGAAGAAATTTATATGCTCCCCAGAATGAGAAACTGTGCAAAACAGATTAGTTTCAATGGAAGTGAAGGGAGGCGCAGTAGAAGTAGGAGATACTCTGGATCTGATAGTGATTCAGTCTCAGAAAGGAAAAGGCCAAAGAAACGTGGAAGACCACGAACTATCCCTCGGGAAAATATTAAAGGATTTAGTGATGCAGAAATTCGGCGGTTTATCAAGAGTTACAAGAAATTTGGTGGCCCTCTGGAAAGATTAGATGCAATTGCTCGAGATGCTGAATTAGTTGATAAGTCAGAGACAGACCTCAGACGACTAGGAGAATTGGTACATAATGGTTGCATTAAAGCTTTAAAGGACAATTCTTCAGGAACAGAACGAACAGGTGGTAGACTTGGAAAAGTAAAGGGTCCAACGTTCCGAATATCAGGAGTACAGGTGAATGCCAAGCTAGTCATCTCCCATGAAGAAGAATTAATACCGTTGCACAAATCCATTCCTTCAGATCCAGAAGAAAGAAAGCAGTATATCATCCCATGCCACACGAAGGCAGCTCATTTTGATATAGACTGGGGCAAAGAAGATGATTCCAATTTGTTAATTGGTATCTACGAATACGGATATGGAAGCTGGGAAATGATTAAAATGGATCCTGACCTCAGTCTGACACACAAGATTCTTCCAGATGATCCTGATAAAAAACCACAAGCAAAACAGTTACAGACACGTGCGGACTACCTCATCAAATTACTTAGTAAAGATCTTGCAAGAAAAGAAGCTCAGAGGCTTTCTGGTGCAGGAGGTTCAAAAAGGAGGAAAGTAAGAGCTAAGAAGAATAAAGCAATGAAGTCTATAAAAATGAAAGAGGAAATAAAGAGCGATTCTTCTCCCCTGCCCTCAGAAAAGTCTGATGAAGATGATGATAAGGATGAGATCACTTCTGTGAAACATCCAAATAAAAAAGTTAAAACAGAAAGAGACAGTGAAGAAAAACCTGAGCCAGATGTTTGTATAAAGAAGGAACCAGAAGAAAAGAGGGAAGCGAAAGAAAAGGAAAATAAAAGAGAACTTAAAAGGGAGATAAAAGAAAAAGAGGATAAGAAAGATATAAAGGAAAAAGATTTTAAAGAGAAAAGAGAAAACAAAGTAAAAGAAGCTATACAGAAAGAAAAAGACATAAAGGAAGAAAAGTTGAGTGAATCCAAGTCTGATAGCAAGGAAAGATCTAAGAAATCTTCAGTGTCGGATGCTCCAGTTCATATCACTGCAAGTGGTGAACCAGTTCCCATATCTGAAGAATCTGAAGAGCTAGATCAGAAGACATTCAGCATATGTAAAGAAAGAATGAGGCCTGTCAAAGCAGCTTTGAAGCAACTTGATAGGCCCGAGAAAGGCCTTTCAGAAAGAGAACAACTGGAACATACTAGACAGTGCTTAATAAAAATTGGAGACCATATCACGGAATGTCTGAAAGAGTATACAAATCCTGAACAAATCAAGCAGTGGAGAAAAAACCTGTGGATTTTTCAAAATAATGACCAGAACAGCAACTTGAATACTCAAGTGATTAGAAATCCAGTTGGACACTTCTATCTAACAGATGTGGAAAGATTAAAAGAGAATACAAATCATGATGATAGCAGCAGGGACAGTTACTCATCTGATAGGCACTTATCTCAATATCATGATCATCATAAAGACCGACATCAGGGAGATTCTTATAAAAAGAGTGACTCTAGGAAAAGACCCTATTCTTCTTTTAGTAATGGTAAAGATCATCGTGATTGGGATCACTACAAGCAAGACAGCAGATACTATAGTGATAGAGAGAAACACAGAAAACTGGATGATCACAGGAGTAGAGACCACAGGTCAAATTTGGAAGGAAGTTTAAAAGACAGAACTCATTCTGATCATCGTTCTCATTCAGATCATCGGTTGCATTCAGACCATCGGTCAAGTTCTGAATATACACACCATAAATCTTCCAGGGATTATAGGTATCACTCAGATTGGCAATTGGACCATAGAGCTTCCAGTAGTGGCTCTAGATCACCACTAGATCAGAGGTCTCCTTATGGCTCCAGATCTCCATTTGAACACTCAATTGAACACAGAAGTACACCTGAGCATACCTGGAGTAGTCGGAAAACATAA

Related Sequences

bmy_14963T0 Protein

Length: 1748 aa      View alignments
>bmy_14963T0
MKPDEITSKAESTIQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLSGAGGSKRRKVRAKKNKAMKSIKMKEEIKSDSSPLPSEKSDEDDDKDEITSVKHPNKKVKTERDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLSESKSDSKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFQNNDQNSNLNTQVIRNPVGHFYLTDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQLDHRASSSGSRSPLDQRSPYGSRSPFEHSIEHRSTPEHTWSSRKT*