Part of scaffold_1073 (Scaffold)

For more information consult the page for scaffold_1073 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL16A1 ENSTTRG00000013277 (Bottlenosed dolphin)

Gene Details

collagen, type XVI, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012621, Bottlenosed dolphin)

Protein Percentage 92.04%
cDNA percentage 93.16%
Ka/Ks Ratio 0.54789 (Ka = 0.0255, Ks = 0.0466)

COL16A1 ENSBTAG00000010050 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037835, Cow)

Protein Percentage 92.13%
cDNA percentage 92.15%
Ka/Ks Ratio 0.2882 (Ka = 0.0465, Ks = 0.1614)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4344 bp    Location:274828..223735   Strand:-
>bmy_14975
ATGTGGGCATCTTGGGCTCCTGGCTTGTGGCTGCTCAGTCTCTGTGTTATCTGCAGCCATGAGGCAGATACAGGGGAGCGGTGCCCACCTTCACAGCAAGAAGGACTCAAGTTGGAACACAGAAGCGACTTATCGACCAACGTGACTGGCTTCAATCTCATCCGCCGACTCAGCCTCATGAAGACATCTGCCATCAAGAAGATCCGAAACCCCAAGGGACCTCTCATCCTGCGACTGGGAGCGGTCTCAGTCACCCAGCCCATGCGACGTGTATTCCCTCGGGGCCTCCCCAGTGAGTTTGCCCTGGTGCTGACACTATCGCTGAAGAAACACACCCACCAGAACACATGGTATTTGTTTCAAGTGACCGATGGAAATGGGTACCCGCAGATTTCCCTGGAAGTCAACAGCCAAGAGCGGAGCCTGGAGCTCCGGGCCCGGGGCCAAGATGGCGACTTTGTGTCCTGCATCTTCTCAGTGCCCCAGCTCTTTGACCTGCGTTGGCACAAGCTGGTGCTGAGCGTGGCTGAACGCGTAGCCTCTGTGCATGTGGACTGCACATCAGTCTCCTCCCGGCCTCTGGGGCCCTGGCGACCCATGCGGCCTGTGGGCCATTGTCCCCCAGAGACCTCCAAGGCCCGCCGGGACACCCAGAGCAATGAGCTCATCGAGATCAATCCACAGACTGAGGGCAAGGTCTACACCCGCTGCTTCTGCCTGGAGGAGCCGCAAAACAGCAAGGTGGATGCCCAGCTGACGGGAAGAATCAGCCAGAAGGCAGAAAGGGGAACAAAGGCCCACCAGGAGACAGCAGTGGATGAGTGCCCACCCTGTGTCCATGGTGCCCGGGAGAGCAACAGAGGGAAAGGTGAGCAGGGCCTGCCTGGTCCATCAGGACCCAAGGGAGAGAAGGGAGCCCGGGGCAATGACTGTGTTCGAATCTCGCCGGACGCCCCGCTTCAGTGTGCAGAAGGCCCAAAGGGAGAGAAGGGGGAGTCGGGAGCCTTGGGACCCTCAGGACTCCCCGGCTCCACAGGACAGAAGGGCCAGAAAGGCGAGAACGGAGACGGTGGCATCAAGGGCTCGCCAGGAAAGCCAGGCCGAGATGGCCGGCCAGGAGAGATCTGTGTCATGGGGCCCAAAGGGCAGAAGGGAGACCCTGGCTTTGTTGGACCTGAGGGGCTGGCGGGAGAACCTGGGCCCCCAGGCCTCCCTGGGCCCCCTGGGATAGGACTTCCTGGGACCCCGGGTGACCCAGGTGGCCCTCCAGGCCCCAAGGGAGACAAGGGCAGCTCCGGAGTGCCGGGAAAGGAAGGTCCTGGTGGGAAACCTGGGAAGCCAGGGATTCCAGGGCTGAAGGGAGAGAAGGGTGACGGCTGCGAAGTGTGCCCAACGCTGCCTAAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCCAAGGGAGAACCGGGTGATCCTGCACCAGCCAGGGAGGGCCTGGGAGCTGTTGGACAAAAGGGTGATCGGGGAGACCCTGGCATCCAAGGCCTCAAAGGAGAAAAGGGGGAGTCCTGCTTGTCCTGCAGCTCAGCCATAGCAGCCCAACATCTTGGGCCCGCTATAGGGCCCAAAGGAGATGTGGGCCCTCCTGGCCTCGGTTTGCCTGGCCTTCCGGGGAAAGTTGGGGCTCCAGGGCCAACAGGGCTGAAAGGAGAGAAGGGTAATTTCGGGGAGGCAGGGCCAGCCGGCAGTCTGGGGGAGCCTTGTGAGGCATGCGGAGCCCTGTCCAAGCACGAGGATGGGGACAGCCACGTGGTGGCCTTGCCTGGGCCTCCCGGAGAGAAGGGGGAGCCTGGGCATCCAGGCTTTGGCCTGCCAGGAAAACAGGGTGATGCTGGGAATCCTGGAGATCCTGGAACACCGGGCACCATGGGGCGGCCGGGACTGTCAGGAGAGCCTGGGGTTCGGGGCCCTGCAGGACCAAAAGGAGAAAAGGGTGATGGCTGCACTGCCTGCCCCAGCCTGCAGGGGGCGTTGACCAACAGGGCAGGACTGCCTGGGAAGCCAGGCCTGAAAGGAGATCCAGGGCCGGAAGGCGTGGGCCGGCCTGGTAAACCGGGCCAGCCTGGTCTACCAGGAGTTCAAGGACCCCCAGGACTGAAGGGCATACAGGGAGAGCCAGGGCCTCCAGGAGTGGGAGTCCAGGGGCCCCAGGGGGAGCCTGGAGCCCAGGGTTTGCCTGGCATTCAGGGGCTCCTGGGACCTCGGGGGCCACCTGGCCCTGCTGGAGAGAAGGGTGCCAAGGGATCTCCAGGGGTGAAAGGAGCCACTGGGCCTGTGGGACCTGCTGGTGCCAGTGTCTCTGGGCCTCCGGGCCGTGATGGGCAGCAAGGACAGACTGGACTTCCAGGAGCCAGAGGGATGCTGGGTGAAAAGGGAGCGCAGGGAGAAAAGGGTCCTCCGGGTATTCCTGGACCACCAGGCCCCCCRGGAATGCCTGGGCTTCAGGGAGTGCCGGGGAACAACGGTTTGCCAGGACAGCCTGGGCTGACTGCAGAGCTGAGCATCTGCGGGGACTGTGTCCAGAGGCAGACGGCCCACCCGGCGGCCCTCCTGGAAAGTGGAGAGAAGGGAGACCAGGGTATCCCCGGCGTGCCAGGCCTCGACAGCTGCGCCCGGTGCTTCATGGAGCGGGAGCGCCCGAGAGCTGAGGAGCCCCGGGGGGACAACAACGAGGGAGATCCGGGCTGTGCAGGGAGCCCCGGCCTGCCCGGTGCTCCGGGACTGCCCGGCCAGAGAGGAGAAGAGGGTCCGCCCGGCATGAGGGGCTCCACGGGTCCTCCAGGCCCTATTGGTCTTCAAGGAGAGCGAGGCCTCAGGGGCCCGACAGGAGAGAAGGGGGAACCGGGTCCTCCAGGGCAACCTGGCTACCCAGGTGCCATGGGCCCCCCGGGACTGCCTGGCATCAAGGGGGAGCGCGGCTACGCGGGTTCCCCGGGAGAGAAGGGAGAATCGGGCCCACCAGGATCTGAAGGCCTCCCAGGTCCCCCAGGCCCAGCAGGTCCCCGAGGAGAGCGAGGACCCCAAGGGAACTTGGGTGAGAAAGGTGACCAGGGTCCCCCTGGATTCCCAGGCAAAGCTGGAGCACCTGGCCCACCTGGCCCCCAAGCGGAGAAGGGCAGTGAAGGGATTCGAGGTCCATCAGGCCTGCCTGGTCCCCCTGGACCACCAGGATCTCCCGGGATTCAGGGCCCTGCCGGTCTGGATGGTCTGGATGGGAAGGACGGCAAGCCTGGYGTGAGGGGGGACCCTGGTCCTGCTGGCCCCCCCGGACTCATGGGACCCCTGGGCTTCAAGGGAAAACCGGGCCATCCTGGCCTCCCAGGACTGAAGGGTGACTGTGGAAAGCCTGGTCCCCCAGGCAGCAGTGGCCGCCCCGGAGCAGAGGGTGAGCCTGGTGCCATGGGACCCCAGGGAAGACCCGGCCCCCCTGGCCACGTTGGGCCCCCGGGGTCTCCAGGCCAACCAGGCCCAGCTGGGATCTCTGCAGTGGGCCCGAAAGGAGACCGAGGATCCACTGGAGAAAGGGGCCTTTCAGGTCTTCCGGGCCAGCCTGGTTCCCCTGGACACCCTGGCCCCCCGGGTGACCTGGGACCTTCYGGGCAGAAGGGCCAGGCAGGGGAGAAGGGAAGAGCTGGCATGCCTGGCGAGCCTGGCAAGAGTGGCTCCATGGGACCTTCTGGGCCGCCGGGTCCTGCAGGAGAGAGAGGCCACCCTGGATCTCCGGGACCTGCAGGGAGCCCTGGTCTGCCCGGGGTACCTGGCTCCATGGGAGACATGGTGAATTATGATGAAATCAAGAGGTTCATCAGACAAGAGATCATTAAAATGTTTGATGAGAGGATGGCTTACTACACCTCCAGGATGCAGTTTCCCATGGAGATGGCAGCAGCTCCGGGACGACCAGGGCCCCCAGGGAAGGACGGTCCCCCGGGCCGGCCAGGTGCCCCGGGATCACCTGGGCTCCCTGGTCAGATTGGCAGAGAAGGTCGGCAGGGCTTGCCCGGGTTGAGAGGATTGCCTGGTACCAAAGGTGAAAAGGGAGACATTGGTGTTGGCATTGCAGGAGAAGTTGGTCTCCCCGGCCCCCCAGGTCCTCAAGGTCCTCCAGGATACGGCAAGATGGGTGCAACTGGGCCGATGGGCCAGCAAGGCATTCCTGGCATCCCTGGCCCCCCAGGCTCCATGGGCCCGCCGGGCAAGGCCGGCCACTGTAGCCCCTCTGACTGCTTTGGGGCCATGCCAATGGAGCAACAGTACCCACCCATGAAAAACATGAAGGGGCCTTTTGGCTGA

Related Sequences

bmy_14975T0 Protein

Length: 1448 aa     
>bmy_14975T0
MWASWAPGLWLLSLCVICSHEADTGERCPPSQQEGLKLEHRSDLSTNVTGFNLIRRLSLMKTSAIKKIRNPKGPLILRLGAVSVTQPMRRVFPRGLPSEFALVLTLSLKKHTHQNTWYLFQVTDGNGYPQISLEVNSQERSLELRARGQDGDFVSCIFSVPQLFDLRWHKLVLSVAERVASVHVDCTSVSSRPLGPWRPMRPVGHCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGRISQKAERGTKAHQETAVDECPPCVHGARESNRGKGEQGLPGPSGPKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLPGSTGQKGQKGENGDGGIKGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGIPGLKGEKGDGCEVCPTLPKGFQNFVGLPGKPGPKGEPGDPAPAREGLGAVGQKGDRGDPGIQGLKGEKGESCLSCSSAIAAQHLGPAIGPKGDVGPPGLGLPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSLGEPCEACGALSKHEDGDSHVVALPGPPGEKGEPGHPGFGLPGKQGDAGNPGDPGTPGTMGRPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGALTNRAGLPGKPGLKGDPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGPQGEPGAQGLPGIQGLLGPRGPPGPAGEKGAKGSPGVKGATGPVGPAGASVSGPPGRDGQQGQTGLPGARGMLGEKGAQGEKGPPGIPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELSICGDCVQRQTAHPAALLESGEKGDQGIPGVPGLDSCARCFMERERPRAEEPRGDNNEGDPGCAGSPGLPGAPGLPGQRGEEGPPGMRGSTGPPGPIGLQGERGLRGPTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNLGEKGDQGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGVRGDPGPAGPPGLMGPLGFKGKPGHPGLPGLKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHVGPPGSPGQPGPAGISAVGPKGDRGSTGERGLSGLPGQPGSPGHPGPPGDLGPSGQKGQAGEKGRAGMPGEPGKSGSMGPSGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGPPGRPGAPGSPGLPGQIGREGRQGLPGLRGLPGTKGEKGDIGVGIAGEVGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGSMGPPGKAGHCSPSDCFGAMPMEQQYPPMKNMKGPFG*